Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30137X
(571 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53343| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.29
SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0) 32 0.38
SB_22561| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.50
SB_13545| Best HMM Match : Peptidase_M49 (HMM E-Value=0) 30 1.2
SB_28910| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_24669| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_56544| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_26806| Best HMM Match : Annexin (HMM E-Value=0) 27 8.2
SB_26631| Best HMM Match : ig (HMM E-Value=1.6e-22) 27 8.2
SB_23194| Best HMM Match : IF_tail (HMM E-Value=1.26117e-44) 27 8.2
>SB_53343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 779
Score = 32.3 bits (70), Expect = 0.29
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = +2
Query: 113 KIVRSEFDASPDGAYNYNFETSNGIVRSETGELKEALDDDNKPHVIVVCVEATVTRT--L 286
++ +SE +SP +Y+ F+++N E+ + K++ +NK V E+ T +
Sbjct: 148 RVTKSESLSSPSNSYSQAFKSNNSR-EEESLDPKKSSGTENKSFETVKGSESRSKETPAV 206
Query: 287 TANLKPLRTSL 319
TAN+K LRT +
Sbjct: 207 TANIKELRTQI 217
>SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1182
Score = 31.9 bits (69), Expect = 0.38
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
Frame = -1
Query: 301 FQVCRQCSCNCSFHAHNNNVRLVVVVESLLQLTSFATHDAVG-SLEIVVVSSIGAGVEFR 125
F +CR C C HA + N + V V+ H+ VG + E V G +
Sbjct: 324 FPLCRPC--RCYGHASSCNPKTGVCVD--------CQHNTVGKNCEACAVGFYGIATKGT 373
Query: 124 PNDLRVVLCRGGSDDGSHKGESYND 50
PND + C GGS Y D
Sbjct: 374 PNDCKRCQCPGGSSGNKFSESCYVD 398
>SB_22561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 31.5 bits (68), Expect = 0.50
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 128 EFDASPDGAYNYNFETSNGIVRSETGELKEALDDDNKPHVIVVCVE 265
E D+ YNY+ NG+ S+ G+L DN HV+ C E
Sbjct: 65 EPDSEQADGYNYDTSHHNGVATSQRGQLARLAMGDNN-HVLNACEE 109
>SB_13545| Best HMM Match : Peptidase_M49 (HMM E-Value=0)
Length = 488
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +2
Query: 125 SEFDASPDGAYNYNFETSNGIVRSETGE 208
+E DA PDG+YN++ ++ +V +ETGE
Sbjct: 218 TEEDAKPDGSYNFDHKS---VVNTETGE 242
>SB_28910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 417
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 92 PPTEDYPKIVRSEFDASPDGAY 157
PPT+DY + RS+ D S DG Y
Sbjct: 17 PPTKDYDRRSRSQDDDSDDGCY 38
>SB_24669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 164
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 130 IRRQPRWSLQLQFRDFQRHRA*RNW*AEGGSRRRQ 234
+RR+ WS+Q++ + RH + W GG ++R+
Sbjct: 3 VRRKDAWSMQVRQVEHPRHSYVQMWRKFGGPKKRE 37
>SB_56544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 937
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +2
Query: 137 ASPDGAYNYNFETSNGIVRSETGELKEALDDDNKPHVIVVCVEATVT 277
ASP N ET + E K +D N+PH+ +V +T
Sbjct: 502 ASPINMVNITIETDGRVESHEVFRAKLTVDTANRPHIELVTPLTEIT 548
>SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2468
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -2
Query: 357 RNRFTLSMVSSLVSEVRNGFRFAVSVRVTVASTHT 253
R T S++S L ++ + +FA +VRV+V ST T
Sbjct: 1865 RQTSTTSIMSDLPTDTQKFLKFAGNVRVSVHSTDT 1899
>SB_26806| Best HMM Match : Annexin (HMM E-Value=0)
Length = 829
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = -1
Query: 238 LVVVVESLLQLTSFATHDAVGSLEIVVVSSIGAGVEFRPNDLRVVLCRGGSDDGSHKGES 59
LV ++S Q+T+ H A+ + + + V+ + AG + R+ L R S G + ES
Sbjct: 274 LVKAIQSPTQMTADKLHSALQNKDTLTVARMIAGADPTARFFRMRLARDTSATGVVECES 333
Query: 58 YND 50
+D
Sbjct: 334 ADD 336
>SB_26631| Best HMM Match : ig (HMM E-Value=1.6e-22)
Length = 1123
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 257 CVEATVTRTLTANLKPLRTSLTRLDT 334
C T +T N KP +TSLTRL++
Sbjct: 348 CPVDTKAMNITVNYKPEKTSLTRLES 373
>SB_23194| Best HMM Match : IF_tail (HMM E-Value=1.26117e-44)
Length = 788
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/59 (27%), Positives = 33/59 (55%)
Frame = +2
Query: 194 SETGELKEALDDDNKPHVIVVCVEATVTRTLTANLKPLRTSLTRLDTMLRVNLFLRSPP 370
+E EL+ ++DD + + ++ V+ + +TA K L + TRL+T ++++PP
Sbjct: 535 NEIAELRTSIDDALRDYEDLMGVKVALDMEITAYRKLLESEETRLNT-----YYIKAPP 588
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,254,464
Number of Sequences: 59808
Number of extensions: 350080
Number of successful extensions: 1111
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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