Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30137X
(571 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g39930.1 68418.m04842 expressed protein ; expression supporte... 29 1.7
At4g22730.1 68417.m03279 leucine-rich repeat transmembrane prote... 29 1.7
At4g09680.1 68417.m01590 expressed protein 28 3.8
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 28 5.0
At3g44400.1 68416.m04770 disease resistance protein (TIR-NBS-LRR... 28 5.0
At4g24290.2 68417.m03488 expressed protein 27 6.7
At4g24290.1 68417.m03487 expressed protein 27 6.7
At4g17370.1 68417.m02604 oxidoreductase family protein weak simi... 27 6.7
At3g44060.1 68416.m04720 F-box family protein contains F-box dom... 27 6.7
At1g18990.1 68414.m02362 expressed protein contains Pfam profile... 27 6.7
At4g08160.1 68417.m01347 glycosyl hydrolase family 10 protein / ... 27 8.8
At3g44630.3 68416.m04798 disease resistance protein RPP1-WsB-lik... 27 8.8
At3g44630.2 68416.m04800 disease resistance protein RPP1-WsB-lik... 27 8.8
At3g44630.1 68416.m04799 disease resistance protein RPP1-WsB-lik... 27 8.8
>At5g39930.1 68418.m04842 expressed protein ; expression supported
by MPSS
Length = 423
Score = 29.5 bits (63), Expect = 1.7
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
Frame = +2
Query: 101 EDYPKIVRSEFDASPDG-AYNYNFETSNGIVRSETGELKEALDDDNKPHVIVVCVEATVT 277
E+ + ++ EF A+ + A +T IVR L A+ N VIVV E +
Sbjct: 204 EELARELKEEFSANAESRASGMVIDTMGFIVREGYALLLHAIRTFNASLVIVVGQEEKLV 263
Query: 278 RTLTANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNS 394
L NLK + +L L+ +F RS R L NS
Sbjct: 264 YDLKKNLK-FKKNLQVLNLEKSEGVFSRSSDFRKTLRNS 301
>At4g22730.1 68417.m03279 leucine-rich repeat transmembrane protein
kinase, putative leucine rich repeat receptor-like
kinase, Oryza sativa, PATCHX:E267533
Length = 688
Score = 29.5 bits (63), Expect = 1.7
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 314 SLTRLDTM-LRVNLFLRSPPPRAKLLNSLDRFK**SLNTGLCGEDPP 451
++ +LDT+ LR N PP K LN +F+ NTGLCG D P
Sbjct: 210 NIPQLDTLDLRNNTLSGFVPPGLKKLNGSFQFE---NNTGLCGIDFP 253
>At4g09680.1 68417.m01590 expressed protein
Length = 1075
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/54 (22%), Positives = 27/54 (50%)
Frame = -1
Query: 373 WRRRPEE*IHPEHGIQSRQRST*WFQVCRQCSCNCSFHAHNNNVRLVVVVESLL 212
W ++ ++ H I++ + + C SC C+ A + N++LV+ + S +
Sbjct: 325 WLLLTDQILNRSHSIRTGSLGGIFTEFCMHESCGCNSEARDCNLKLVMPISSFV 378
>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 4706
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 262 GSYSYTNTDGKPETITYFADETGYHAQGESIP 357
GS++ N +G E I +FA+E GY +S+P
Sbjct: 1985 GSFTTFNKNGTAERI-FFAEEIGYELLKDSLP 2015
>At3g44400.1 68416.m04770 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1007
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 461 VTRY*FDAHCHIFLYVFFTICCVFNMSCTKTIK 559
+ ++ +DA C Y+F I C+FN T +K
Sbjct: 447 IIQFSYDALCDEDKYLFLYIACLFNYESTTKVK 479
>At4g24290.2 68417.m03488 expressed protein
Length = 606
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 163 VVVSSIGAGVEFRPNDLRVVLCRGGSDD 80
V + SIG G + DLR+ C+GGS D
Sbjct: 13 VAIGSIGCGYDLAI-DLRLKYCKGGSKD 39
>At4g24290.1 68417.m03487 expressed protein
Length = 350
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 163 VVVSSIGAGVEFRPNDLRVVLCRGGSDD 80
V + SIG G + DLR+ C+GGS D
Sbjct: 13 VAIGSIGCGYDLAI-DLRLKYCKGGSKD 39
>At4g17370.1 68417.m02604 oxidoreductase family protein weak
similarity to SP|P26935 Myo-inositol 2-dehydrogenase (EC
1.1.1.18). {Bacillus subtilis}; contains Pfam profiles
PF01408: Oxidoreductase family NAD-binding Rossmann
fold, PF02894: Oxidoreductase family C-terminal
alpha/beta domain
Length = 368
Score = 27.5 bits (58), Expect = 6.7
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +2
Query: 233 NKPHVIVVCVEATVTRTLTANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSL 397
+KPH ++V E + T+ + L + R D +++V L R PP AKL+ +
Sbjct: 101 SKPHHVLV--EKPLCTTVADCKQVLEAAKKRSDMVVQVGLEYRYMPPVAKLIEQV 153
>At3g44060.1 68416.m04720 F-box family protein contains F-box domain
Pfam:PF00646
Length = 427
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 138 PAPMELTTTISRLPTASCVAKL 203
P M+LT + +LPTASC K+
Sbjct: 403 PKKMQLTEDLLKLPTASCKLKI 424
>At1g18990.1 68414.m02362 expressed protein contains Pfam profile
PF04576: Protein of unknown function, DUF593
Length = 524
Score = 27.5 bits (58), Expect = 6.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 182 GIVRSETGELKEALDDDNKP 241
G++R E GE +E LD++ KP
Sbjct: 401 GLLREERGEAEEFLDEETKP 420
>At4g08160.1 68417.m01347 glycosyl hydrolase family 10 protein /
carbohydrate-binding domain-containing protein ;
contains Pfam profiles PF00331: Glycosyl hydrolase
family 10, PF02018: Carbohydrate binding domain
Length = 752
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/20 (70%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +2
Query: 341 RVNLFLRSPPPRAK-LLNSL 397
RV L+L PPPRA LLNSL
Sbjct: 154 RVILYLEGPPPRADILLNSL 173
>At3g44630.3 68416.m04798 disease resistance protein RPP1-WsB-like
(TIR-NBS-LRR class), putative domain signature
TIR-NBS-LRR exists, suggestive of a disease resistance
protein., closest Col-0 homolog to RPP1-WsB
Length = 1240
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 461 VTRY*FDAHCHIFLYVFFTICCVFNMSCTKTIK 559
+ ++ +DA C Y+F I C+FN T +K
Sbjct: 502 IIQFSYDALCDEDKYLFLYIACLFNGESTTKVK 534
>At3g44630.2 68416.m04800 disease resistance protein RPP1-WsB-like
(TIR-NBS-LRR class), putative domain signature
TIR-NBS-LRR exists, suggestive of a disease resistance
protein., closest Col-0 homolog to RPP1-WsB
Length = 1214
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 461 VTRY*FDAHCHIFLYVFFTICCVFNMSCTKTIK 559
+ ++ +DA C Y+F I C+FN T +K
Sbjct: 502 IIQFSYDALCDEDKYLFLYIACLFNGESTTKVK 534
>At3g44630.1 68416.m04799 disease resistance protein RPP1-WsB-like
(TIR-NBS-LRR class), putative domain signature
TIR-NBS-LRR exists, suggestive of a disease resistance
protein., closest Col-0 homolog to RPP1-WsB
Length = 1214
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 461 VTRY*FDAHCHIFLYVFFTICCVFNMSCTKTIK 559
+ ++ +DA C Y+F I C+FN T +K
Sbjct: 502 IIQFSYDALCDEDKYLFLYIACLFNGESTTKVK 534
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,861,486
Number of Sequences: 28952
Number of extensions: 236112
Number of successful extensions: 738
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -