Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30136X
(465 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos... 106 1e-24
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S... 104 6e-24
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 27 1.9
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po... 27 1.9
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 1.9
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb... 25 4.3
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 25 4.3
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 25 5.7
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos... 25 5.7
SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase catal... 25 5.7
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 25 7.5
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 25 7.5
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ... 24 9.9
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 24 9.9
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 24 9.9
>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 187
Score = 106 bits (255), Expect = 1e-24
Identities = 67/159 (42%), Positives = 96/159 (60%), Gaps = 7/159 (4%)
Frame = +2
Query: 2 MGIDINHKHDRKVRRTEVKSQDI-LEVTCKALQILGQTYKCQIQSDRSTPALYEPYQPGT 178
MGIDI H RK +R++ S+++ L++ K + L + + S + L +Q T
Sbjct: 1 MGIDIERHHVRKSQRSKPASENVYLKLLVKLYRFLAR----RTDSRFNKAILKRLFQSKT 56
Query: 179 N---LCVSFGAPHEEANS*GFDCRGS---GDITNDVRLYKIPKMTVAALHVTAKARARIL 340
N + +S A S + + + G +T+D RL +PK++VAAL T ARARIL
Sbjct: 57 NRPPISISKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARIL 116
Query: 341 AAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFG 457
AGGE+LT DQLALRAPTG TVL++G+++AREA RHFG
Sbjct: 117 KAGGEVLTLDQLALRAPTGSNTVLLRGKKHAREAYRHFG 155
>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 104 bits (250), Expect = 6e-24
Identities = 66/159 (41%), Positives = 96/159 (60%), Gaps = 7/159 (4%)
Frame = +2
Query: 2 MGIDINHKHDRKVRRTEVKSQDI-LEVTCKALQILGQTYKCQIQSDRSTPALYEPYQPGT 178
MGIDI H +K +R++ S+++ L++ K + L + + S + L +Q T
Sbjct: 1 MGIDIERHHVKKSQRSKPASENVYLKLLVKLYRFLAR----RTDSRFNKAILKRLFQSKT 56
Query: 179 N---LCVSFGAP---HEEANS*GFDCRGSGDITNDVRLYKIPKMTVAALHVTAKARARIL 340
N + +S A + A+S G +T+D R+ +PK+++AAL T ARARIL
Sbjct: 57 NRPPISISKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARIL 116
Query: 341 AAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFG 457
AGGE+LT DQLALRAPTG TVLV+G+++AREA RHFG
Sbjct: 117 KAGGEVLTLDQLALRAPTGSNTVLVRGKKHAREAYRHFG 155
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 1.9
Identities = 12/51 (23%), Positives = 24/51 (47%)
Frame = -3
Query: 310 MKSSHRHLRYLVQSHVICDVPTTTAIKPSXVGFFMWRAKRDTEIGARLIRL 158
+K+S HL +Q ++ + P + +++WR + E +IRL
Sbjct: 231 LKASRIHLETSIQPKLMLLTGIILLVAPILLSYYVWRRRIHFETSFNIIRL 281
>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 427
Score = 26.6 bits (56), Expect = 1.9
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -3
Query: 361 KNFSSSSQNACTSFCGNMKSSHRHLRYLVQSHVICDVPT 245
KN+ SS + TS N+ +S+R +R +QS V + PT
Sbjct: 170 KNWLSSELSHSTSKYLNITTSNRFIRKAIQSLVKIEFPT 208
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 26.6 bits (56), Expect = 1.9
Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
Frame = -3
Query: 403 LLASRSTKSQLIKSKNFSSSSQNACTSFCGNMKSSHRHLRYLVQSHVICDVPT---TTAI 233
L+A ST S K S + F K S RYL Q IC+ P+ T++
Sbjct: 53 LVADFSTHSNPSKDNQLISPPKINHREFLNEEKESDTQTRYLKQLINICNSPSKNHETSL 112
Query: 232 KPSXVGFFMWRAKRDTEI 179
PS K D EI
Sbjct: 113 SPSKSTIDNNERKLDNEI 130
>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 657
Score = 25.4 bits (53), Expect = 4.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 20 HKHDRKVRRTEVKSQDILEVTCKALQILGQTYKCQI 127
++H K EVK+ D ++V KAL L + K Q+
Sbjct: 524 YRHCLKQFSVEVKTPDAVDVAHKALNTLDEETKHQV 559
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 25.4 bits (53), Expect = 4.3
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +2
Query: 263 DVRLYKIPKMTVAALHVTAKARARILAAGGEILTFDQL 376
D+ Y+IP + + + T +A+ R G+IL D +
Sbjct: 59 DLLFYEIPFLLIKHIENTEEAKLRFALPQGQILEIDTI 96
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 25.0 bits (52), Expect = 5.7
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +2
Query: 368 DQLALRAPTGKKTVLVQGQRNAREAVRHFGPA 463
D++ + P G K + Q ++ R A++H+ A
Sbjct: 120 DEILPKEPAGSKEAMQQKKKEKRAALKHYREA 151
>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 25.0 bits (52), Expect = 5.7
Identities = 9/32 (28%), Positives = 13/32 (40%)
Frame = -2
Query: 251 PHYHGNQTLXSWLLHVARQTRHRDWCPVDTAH 156
P YH + L+H+ R +W P H
Sbjct: 220 PTYHFANVVDDHLMHITHVIRGEEWVPSTIKH 251
>SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase
catalytic subunit Dpm1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 25.0 bits (52), Expect = 5.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 242 GSGDITNDVRLYKIPKMTVAALHVTAK 322
G D+T RLYK P + VT+K
Sbjct: 156 GVSDVTGSFRLYKKPVLETLMSEVTSK 182
>SPCC1183.07 |||U3 snoRNP-associated protein
Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1690
Score = 24.6 bits (51), Expect = 7.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 82 SNLKYILRFNFGAPNFPVVFMIDV 11
S L ++L FNF PN P +D+
Sbjct: 374 SFLPHVLTFNFATPNTPHPDQLDI 397
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 24.6 bits (51), Expect = 7.5
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +2
Query: 353 EILTFDQLALRAPTGKKTVLVQGQRNAREAV 445
E+L D +L P+GK T LV + + +
Sbjct: 434 EVLVLDNFSLVCPSGKITALVGASGSGKSTI 464
>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 24.2 bits (50), Expect = 9.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 364 SKNFSSSSQNACTSFCGNMKSSHRH 290
SKN SS N+ TSF ++ + +RH
Sbjct: 2 SKNSFSSMANSVTSFFQSLTTPNRH 26
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 24.2 bits (50), Expect = 9.9
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 270 LTSFVMSPLPRQSNPXELASSC 205
L F P+ QSNP L S+C
Sbjct: 18 LGEFQFQPIRTQSNPSSLLSAC 39
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 24.2 bits (50), Expect = 9.9
Identities = 20/75 (26%), Positives = 32/75 (42%)
Frame = -3
Query: 463 SRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQNACTSFCGNMKSSHRHLR 284
S + + TS S + +S S+ S S + SSSS + +S + +SHR
Sbjct: 124 SSSSLVSSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSSSSSSKSSSRSSSRTTSHRTTS 183
Query: 283 YLVQSHVICDVPTTT 239
+ S+ P TT
Sbjct: 184 HKSSSYRPTVFPYTT 198
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,926,301
Number of Sequences: 5004
Number of extensions: 37637
Number of successful extensions: 115
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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