Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30136X
(465 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 104 4e-23
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 99 9e-22
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 85 4e-17
09_04_0643 + 19176561-19176644,19176761-19176902,19178084-191781... 28 3.2
11_01_0572 + 4565353-4565535,4566856-4567095,4567922-4568086,456... 28 4.3
04_01_0249 - 3284107-3286377 27 7.4
07_03_0435 + 18182657-18183509,18184477-18184574,18184663-181848... 27 9.8
07_01_0755 - 5806614-5806939,5807039-5809415 27 9.8
02_05_0895 - 32593155-32593190,32594228-32594279,32594544-325945... 27 9.8
02_03_0371 - 18267986-18268378 27 9.8
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 104 bits (249), Expect = 4e-23
Identities = 48/72 (66%), Positives = 59/72 (81%)
Frame = +2
Query: 248 GDITNDVRLYKIPKMTVAALHVTAKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 427
G +T+D R+Y++P M VAAL T ARARI+ AGGE LTFDQLALRAP G+ TVL++G +
Sbjct: 91 GTVTDDKRIYEVPAMKVAALRFTETARARIINAGGECLTFDQLALRAPLGQNTVLLRGPK 150
Query: 428 NAREAVRHFGPA 463
NAREAV+HFGPA
Sbjct: 151 NAREAVKHFGPA 162
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 6/53 (11%)
Frame = +3
Query: 114 TNAKFNQIVLRRLFMSRINRAPISVSRLARHM--KKPTXEGL----IAVVVGT 254
T + FN ++L+RLFMS+ NR P+S+ RL R M K P + IAV+VGT
Sbjct: 40 TKSHFNAVILKRLFMSKTNRPPLSMRRLVRFMEGKVPDRHAISGDQIAVIVGT 92
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 99 bits (238), Expect = 9e-22
Identities = 48/72 (66%), Positives = 57/72 (79%)
Frame = +2
Query: 248 GDITNDVRLYKIPKMTVAALHVTAKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 427
G +T+D R+ +IPKM V AL T ARARI+ AGGE LTFDQLALRAP G+ TVL++G +
Sbjct: 84 GTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGECLTFDQLALRAPLGENTVLLRGPK 143
Query: 428 NAREAVRHFGPA 463
NAREAVRHFG A
Sbjct: 144 NAREAVRHFGKA 155
Score = 50.0 bits (114), Expect = 9e-07
Identities = 24/47 (51%), Positives = 34/47 (72%)
Frame = +3
Query: 114 TNAKFNQIVLRRLFMSRINRAPISVSRLARHMKKPTXEGLIAVVVGT 254
T + FN ++L+RLFMS+ NR P+S+ RLA+ M + E IAV+VGT
Sbjct: 40 TKSNFNAVILKRLFMSKTNRPPLSLRRLAKFM-EGKEENNIAVIVGT 85
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 84.6 bits (200), Expect = 4e-17
Identities = 47/89 (52%), Positives = 58/89 (65%), Gaps = 17/89 (19%)
Frame = +2
Query: 248 GDITNDVRLYKIPKMTVAALHVTAKARARILAAGGEILTFDQLALRAPTGKKT------- 406
G +T+D R+Y++P M VAAL T ARARI+ GGE LTFDQLALRAP G+ T
Sbjct: 83 GTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGECLTFDQLALRAPLGQNTYIAMPEI 142
Query: 407 ----------VLVQGQRNAREAVRHFGPA 463
VL++G +NAREAV+HFGPA
Sbjct: 143 LTIDNFALLQVLLRGPKNAREAVKHFGPA 171
Score = 50.4 bits (115), Expect = 7e-07
Identities = 25/47 (53%), Positives = 33/47 (70%)
Frame = +3
Query: 114 TNAKFNQIVLRRLFMSRINRAPISVSRLARHMKKPTXEGLIAVVVGT 254
T + FN ++LRRLFMS+ NR P+S+ RL R M+ E IAV+VGT
Sbjct: 40 TKSPFNAVILRRLFMSKTNRPPLSLRRLVRFME--GKENQIAVIVGT 84
>09_04_0643 +
19176561-19176644,19176761-19176902,19178084-19178172,
19178470-19179195
Length = 346
Score = 28.3 bits (60), Expect = 3.2
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 275 YKIPKMTVAALHVTAKARARILAAGGEILTFDQ-LALRAPTGKKTVLVQGQRNAREAVRH 451
Y + +A LHVTA AR LA + L D+ L R P G G+R +AV H
Sbjct: 182 YAVQLAKLAGLHVTATCGARNLAFVRDGLGADEALDYRTPDGAALRSPSGRR--YDAVAH 239
Query: 452 FGP 460
P
Sbjct: 240 CAP 242
>11_01_0572 +
4565353-4565535,4566856-4567095,4567922-4568086,
4568612-4568887
Length = 287
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 360 LLLISWLFVLRLARRQYWYKVSEML 434
LL+++WLFV+ RR W +V E+L
Sbjct: 143 LLVLAWLFVIDFGRR-VWGEVDELL 166
>04_01_0249 - 3284107-3286377
Length = 756
Score = 27.1 bits (57), Expect = 7.4
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +3
Query: 138 VLRRLFMSRINRAPISVSRLARHMKKPTXEGLIAVVVGTSQMT*DCTRY 284
++RRL +S +N + R+ + KKPT + + +G + +CTRY
Sbjct: 359 LIRRLIVSDLN-----LFRILDNNKKPTRYRMWSQTIGQYNLLHECTRY 402
>07_03_0435 +
18182657-18183509,18184477-18184574,18184663-18184833,
18185524-18185624,18185702-18185837,18186007-18186057,
18186202-18186489,18186610-18186844,18186924-18187204,
18187336-18187557
Length = 811
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 140 STPALYEPYQPGTNLCV-SFGAPHEEANS 223
S PA ++ Y+P TNL + S+ P+ A+S
Sbjct: 701 SVPAYFQQYEPSTNLILPSYLLPYAAASS 729
>07_01_0755 - 5806614-5806939,5807039-5809415
Length = 900
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = -3
Query: 298 HRHLRYLVQSHVICDVPTTTAIKPSXVGFFMWRAKRDTEIGARL 167
HR + Y V V+ ++ V FMWR +++ E A++
Sbjct: 537 HRKISYRVALAVVGSCVLIFSVVSLVVALFMWRERQEKEAEAKM 580
>02_05_0895 -
32593155-32593190,32594228-32594279,32594544-32594584,
32594795-32594906,32595195-32595268,32595349-32595587,
32595710-32596678,32596725-32596878,32596957-32597244,
32597393-32597534,32598679-32598752,32598870-32598890
Length = 733
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 268 ETVQDTEDDGGCSSCYRKSS 327
E VQ +DD G S C R+SS
Sbjct: 253 ENVQSDDDDSGPSQCMRESS 272
>02_03_0371 - 18267986-18268378
Length = 130
Score = 26.6 bits (56), Expect = 9.8
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = +2
Query: 5 GIDINHKHDRKVRRTEVKSQDIL 73
G+++NH+ D ++R E +QD++
Sbjct: 45 GVEVNHRGDEEIRVPEGPNQDVV 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,187,800
Number of Sequences: 37544
Number of extensions: 278260
Number of successful extensions: 813
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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