Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30136X
         (465 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)               99   2e-21
SB_18414| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)                 27   5.8  
SB_9494| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.7  

>SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score = 99.1 bits (236), Expect = 2e-21
 Identities = 62/155 (40%), Positives = 84/155 (54%), Gaps = 2/155 (1%)
 Frame = +2

Query: 5   GIDINHKHDRKVRRTEVKSQDI-LEVTCKALQILGQTYKCQI-QSDRSTPALYEPYQPGT 178
           GIDI  KH +K  R E  SQ++ + +  K  + L +    +  Q       +    +P  
Sbjct: 109 GIDIEKKHPKKNYRREPVSQNVYIRLLVKLYRFLSRRTNAKFNQIVMKRLCMSRTKRPPL 168

Query: 179 NLCVSFGAPHEEANS*GFDCRGSGDITNDVRLYKIPKMTVAALHVTAKARARILAAGGEI 358
           +L           +     C   G IT+D R++++P + + AL  +  ARARIL AGGEI
Sbjct: 169 SLARLVRKMKASGHKDKI-CVVVGSITDDKRIFEVPALKICALRFSETARARILKAGGEI 227

Query: 359 LTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPA 463
           LTFDQLALRAP G+ TVL+QG R AREA RH G A
Sbjct: 228 LTFDQLALRAPLGQNTVLLQGPRKAREAERHMGLA 262



 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 27/47 (57%), Positives = 34/47 (72%)
 Frame = +3

Query: 114 TNAKFNQIVLRRLFMSRINRAPISVSRLARHMKKPTXEGLIAVVVGT 254
           TNAKFNQIV++RL MSR  R P+S++RL R MK    +  I VVVG+
Sbjct: 146 TNAKFNQIVMKRLCMSRTKRPPLSLARLVRKMKASGHKDKICVVVGS 192


>SB_18414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 300

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 9/51 (17%)
 Frame = -3

Query: 406 CLLASRSTKSQLIKSKNFS-----SSSQNACT----SFCGNMKSSHRHLRY 281
           CLL S +T ++L      +     SS   AC     + CGN+ ++HRH RY
Sbjct: 7   CLLLSDTTGTRLTGLSRVNGDLRVSSGDRACVFIIHASCGNVLATHRHTRY 57


>SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 391 RSTKSQLIKSKNFSSSSQNACTSFCGNMKSSHRHLRY 281
           R+ +S L+ S+N   ++QNA T+F  + K  H +  Y
Sbjct: 16  RANESTLLTSENNDIANQNADTAFFTSKKKRHNNNSY 52


>SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 294 RWLLFMLPQKLVHAFWLLEEKFLLLISWLFVLRLARRQYW 413
           RWL ++  + L H  WL   ++L  +SWL+ +R      W
Sbjct: 19  RWLNYV--RWLYHVRWLYHVRWLYHVSWLYHVRWLYHVRW 56


>SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1207

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 338 LAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFG 457
           LA  G   T        PT  +T+ + GQ   R A+R FG
Sbjct: 856 LATSGNTSTTISDNTATPTSSRTMQIPGQTQGRVALREFG 895


>SB_9494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 670

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -2

Query: 440 PHEHFADLVPVLSSCQSEHEEPADQK*EFLLQQPKCVHELLR*HEEQP 297
           PHE   +LVP L   + E EE  D + E  L++P  V +    H  +P
Sbjct: 619 PHEPHFELVPPLKKPRCESEE--DDEEEHDLKRPSVVDDTELVHPTEP 664


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,969,674
Number of Sequences: 59808
Number of extensions: 303729
Number of successful extensions: 909
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)