Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30136X
(465 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18 p... 110 3e-24
L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18 pro... 109 3e-24
BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18 p... 109 3e-24
BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18 p... 109 3e-24
AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18 p... 109 3e-24
DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18 p... 92 7e-19
>BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 110 bits (264), Expect = 3e-24
Identities = 72/161 (44%), Positives = 95/161 (59%), Gaps = 7/161 (4%)
Frame = +2
Query: 2 MGIDINHKHDRKVRRTEVKSQDI-LEVTCKALQILGQTYKCQIQSDRSTPALYEPYQPGT 178
MG+DI H DRKVRR E KSQDI L + K + L + + S + L + T
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLAR----RTNSTFNQVVLKRLFMSRT 56
Query: 179 N---LCVSFGAPHEEANS*GFDCRGS---GDITNDVRLYKIPKMTVAALHVTAKARARIL 340
N LC+S + G + + + G IT+DVR+ ++PK+ V AL VT++AR+RIL
Sbjct: 57 NRPPLCLS--RMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRIL 114
Query: 341 AAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPA 463
AGG+ILTFDQLAL +P G TVL+ G R RE RHFG A
Sbjct: 115 RAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKA 155
Score = 61.7 bits (143), Expect = 1e-09
Identities = 29/47 (61%), Positives = 35/47 (74%)
Frame = +3
Query: 114 TNAKFNQIVLRRLFMSRINRAPISVSRLARHMKKPTXEGLIAVVVGT 254
TN+ FNQ+VL+RLFMSR NR P+ +SR+ R MK P E AVVVGT
Sbjct: 39 TNSTFNQVVLKRLFMSRTNRPPLCLSRMIRKMKLPGRENKTAVVVGT 85
>L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 109 bits (263), Expect = 3e-24
Identities = 70/159 (44%), Positives = 93/159 (58%), Gaps = 5/159 (3%)
Frame = +2
Query: 2 MGIDINHKHDRKVRRTEVKSQDI-LEVTCKALQILGQTYKCQIQSDRSTPALYEPYQPGT 178
MG+DI H DRKVRR E KSQDI L + K + L + + S + L + T
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLAR----RTNSTFNQVVLKRLFMSRT 56
Query: 179 NLC-VSFGAPHEEANS*GFDCRGS---GDITNDVRLYKIPKMTVAALHVTAKARARILAA 346
N +S + G + + + G IT+DVR+ ++PK+ V AL VT++AR+RIL A
Sbjct: 57 NRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRA 116
Query: 347 GGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPA 463
GG+ILTFDQLAL +P G TVL+ G R RE RHFG A
Sbjct: 117 GGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKA 155
Score = 63.7 bits (148), Expect = 3e-10
Identities = 30/47 (63%), Positives = 36/47 (76%)
Frame = +3
Query: 114 TNAKFNQIVLRRLFMSRINRAPISVSRLARHMKKPTXEGLIAVVVGT 254
TN+ FNQ+VL+RLFMSR NR P+S+SR+ R MK P E AVVVGT
Sbjct: 39 TNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGT 85
>BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 109 bits (263), Expect = 3e-24
Identities = 70/159 (44%), Positives = 93/159 (58%), Gaps = 5/159 (3%)
Frame = +2
Query: 2 MGIDINHKHDRKVRRTEVKSQDI-LEVTCKALQILGQTYKCQIQSDRSTPALYEPYQPGT 178
MG+DI H DRKVRR E KSQDI L + K + L + + S + L + T
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLAR----RTNSTFNQVVLKRLFMSRT 56
Query: 179 NLC-VSFGAPHEEANS*GFDCRGS---GDITNDVRLYKIPKMTVAALHVTAKARARILAA 346
N +S + G + + + G IT+DVR+ ++PK+ V AL VT++AR+RIL A
Sbjct: 57 NRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRA 116
Query: 347 GGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPA 463
GG+ILTFDQLAL +P G TVL+ G R RE RHFG A
Sbjct: 117 GGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKA 155
Score = 63.7 bits (148), Expect = 3e-10
Identities = 30/47 (63%), Positives = 36/47 (76%)
Frame = +3
Query: 114 TNAKFNQIVLRRLFMSRINRAPISVSRLARHMKKPTXEGLIAVVVGT 254
TN+ FNQ+VL+RLFMSR NR P+S+SR+ R MK P E AVVVGT
Sbjct: 39 TNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGT 85
>BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 109 bits (263), Expect = 3e-24
Identities = 70/159 (44%), Positives = 93/159 (58%), Gaps = 5/159 (3%)
Frame = +2
Query: 2 MGIDINHKHDRKVRRTEVKSQDI-LEVTCKALQILGQTYKCQIQSDRSTPALYEPYQPGT 178
MG+DI H DRKVRR E KSQDI L + K + L + + S + L + T
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLAR----RTNSTFNQVVLKRLFMSRT 56
Query: 179 NLC-VSFGAPHEEANS*GFDCRGS---GDITNDVRLYKIPKMTVAALHVTAKARARILAA 346
N +S + G + + + G IT+DVR+ ++PK+ V AL VT++AR+RIL A
Sbjct: 57 NRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRA 116
Query: 347 GGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPA 463
GG+ILTFDQLAL +P G TVL+ G R RE RHFG A
Sbjct: 117 GGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKA 155
Score = 63.7 bits (148), Expect = 3e-10
Identities = 30/47 (63%), Positives = 36/47 (76%)
Frame = +3
Query: 114 TNAKFNQIVLRRLFMSRINRAPISVSRLARHMKKPTXEGLIAVVVGT 254
TN+ FNQ+VL+RLFMSR NR P+S+SR+ R MK P E AVVVGT
Sbjct: 39 TNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGT 85
>AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 109 bits (263), Expect = 3e-24
Identities = 70/159 (44%), Positives = 93/159 (58%), Gaps = 5/159 (3%)
Frame = +2
Query: 2 MGIDINHKHDRKVRRTEVKSQDI-LEVTCKALQILGQTYKCQIQSDRSTPALYEPYQPGT 178
MG+DI H DRKVRR E KSQDI L + K + L + + S + L + T
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLAR----RTNSTFNQVVLKRLFMSRT 56
Query: 179 NLC-VSFGAPHEEANS*GFDCRGS---GDITNDVRLYKIPKMTVAALHVTAKARARILAA 346
N +S + G + + + G IT+DVR+ ++PK+ V AL VT++AR+RIL A
Sbjct: 57 NRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRA 116
Query: 347 GGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPA 463
GG+ILTFDQLAL +P G TVL+ G R RE RHFG A
Sbjct: 117 GGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKA 155
Score = 63.7 bits (148), Expect = 3e-10
Identities = 30/47 (63%), Positives = 36/47 (76%)
Frame = +3
Query: 114 TNAKFNQIVLRRLFMSRINRAPISVSRLARHMKKPTXEGLIAVVVGT 254
TN+ FNQ+VL+RLFMSR NR P+S+SR+ R MK P E AVVVGT
Sbjct: 39 TNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGT 85
>DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18
protein.
Length = 164
Score = 92.3 bits (219), Expect = 7e-19
Identities = 44/72 (61%), Positives = 55/72 (76%)
Frame = +2
Query: 248 GDITNDVRLYKIPKMTVAALHVTAKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 427
G IT+DVR+ ++PK+ V AL VT++AR+RIL AGG+ILTFDQLAL +P G TVL+ G R
Sbjct: 61 GTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPR 120
Query: 428 NAREAVRHFGPA 463
RE RHFG A
Sbjct: 121 KGREVYRHFGKA 132
Score = 63.7 bits (148), Expect = 3e-10
Identities = 30/47 (63%), Positives = 36/47 (76%)
Frame = +3
Query: 114 TNAKFNQIVLRRLFMSRINRAPISVSRLARHMKKPTXEGLIAVVVGT 254
TN+ FNQ+VL+RLFMSR NR P+S+SR+ R MK P E AVVVGT
Sbjct: 16 TNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGT 62
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,670,056
Number of Sequences: 237096
Number of extensions: 1529755
Number of successful extensions: 3165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3165
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3986009860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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