Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30136X
         (465 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical ...   118   2e-27
AC006804-4|ABO16464.1|  369|Caenorhabditis elegans Hypothetical ...    32   0.18 
AC006804-3|AAF60757.2|  388|Caenorhabditis elegans Hypothetical ...    32   0.18 
U40415-6|AAP68933.1|  329|Caenorhabditis elegans Homolog of yeas...    29   2.2  
Z71185-8|CAI46564.1|  158|Caenorhabditis elegans Hypothetical pr...    27   5.0  
U38377-2|AAN72421.1|  199|Caenorhabditis elegans Sox (mammalian ...    27   8.8  
U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian ...    27   8.8  
AL110487-5|CAB54428.1|  237|Caenorhabditis elegans Hypothetical ...    27   8.8  
AC024817-55|AAF59563.3|  366|Caenorhabditis elegans Hypothetical...    27   8.8  

>AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical
           protein Y45F10D.12 protein.
          Length = 188

 Score =  118 bits (285), Expect = 2e-27
 Identities = 68/155 (43%), Positives = 89/155 (57%), Gaps = 1/155 (0%)
 Frame = +2

Query: 2   MGIDINHKHDRKVRRTEVKSQD-ILEVTCKALQILGQTYKCQIQSDRSTPALYEPYQPGT 178
           MGIDINHKHDR  RRT  KS++  L +  K    L +    +  +               
Sbjct: 1   MGIDINHKHDRVARRTAPKSENPYLRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQP 60

Query: 179 NLCVSFGAPHEEANS*GFDCRGSGDITNDVRLYKIPKMTVAALHVTAKARARILAAGGEI 358
                     ++A +          +T+D RLY +PK++VAALHVT  ARARILAAGGEI
Sbjct: 61  LSLAKLARAVQKAGNENKTVVTLSTVTDDARLYTVPKISVAALHVTEGARARILAAGGEI 120

Query: 359 LTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPA 463
           +T DQLAL++P G+ TV +QG R+AREA +HFGPA
Sbjct: 121 ITLDQLALKSPKGENTVFLQGPRSAREAEKHFGPA 155



 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 23/47 (48%), Positives = 31/47 (65%)
 Frame = +3

Query: 114 TNAKFNQIVLRRLFMSRINRAPISVSRLARHMKKPTXEGLIAVVVGT 254
           T  KFN IVL+RL MSR NR P+S+++LAR ++K   E    V + T
Sbjct: 39  TGEKFNAIVLKRLRMSRRNRQPLSLAKLARAVQKAGNENKTVVTLST 85


>AC006804-4|ABO16464.1|  369|Caenorhabditis elegans Hypothetical
           protein Y53G8B.4b protein.
          Length = 369

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = -3

Query: 430 ISLTLYQYCLLASRSTKSQLIKSKNFSSSSQNACTSFCGNMKSSHRHLRY 281
           ++++LYQ   L SR   S  + + +FSSSS N    +C    +S+R + Y
Sbjct: 321 VNISLYQVQRLVSRP--SATLANADFSSSSTNLVDDYCMRQSNSNRRMVY 368


>AC006804-3|AAF60757.2|  388|Caenorhabditis elegans Hypothetical
           protein Y53G8B.4 protein.
          Length = 388

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = -3

Query: 430 ISLTLYQYCLLASRSTKSQLIKSKNFSSSSQNACTSFCGNMKSSHRHLRY 281
           ++++LYQ   L SR   S  + + +FSSSS N    +C    +S+R + Y
Sbjct: 340 VNISLYQVQRLVSRP--SATLANADFSSSSTNLVDDYCMRQSNSNRRMVY 387


>U40415-6|AAP68933.1|  329|Caenorhabditis elegans Homolog of yeast
           longevity geneprotein 2 protein.
          Length = 329

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +3

Query: 297 WLLFMLPQKLVHAFWLLEEKFLLLISWLFVLRLARRQYWYKVSEMLVRQCVTLALL 464
           W    +P  +   +W+    ++ L+  +  L   R  +W    +MLV   +TLAL+
Sbjct: 125 WPFHPIPNAVAWYYWIQGGFYIALVFGILFLDAKRSDFW----QMLVHHFITLALI 176


>Z71185-8|CAI46564.1|  158|Caenorhabditis elegans Hypothetical
           protein C35A5.11 protein.
          Length = 158

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
 Frame = -3

Query: 331 CTSFCGNMKSSHRHLRYLVQSHVICDVPTTTAIKPSXVGFFMWRAK--RDTEIGARLIRL 158
           C   C    +++R  R+  Q H  C   TT  ++     F++WR+   R + IG  +   
Sbjct: 78  CDLLCPGADTAYRITRW-PQQHKTCFTHTTYRLERREDNFYLWRSGDCRTSTIGFTIRCE 136

Query: 157 IKSRRRTI*LNLAFVRLAKYL 95
            KS R     +    R+A+ L
Sbjct: 137 FKSPRDDFLSDQELFRVARRL 157


>U38377-2|AAN72421.1|  199|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 2, isoform b protein.
          Length = 199

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 125 IQSDRSTPALYEPYQPGTNLCVSFGAPHEEANS*GFD 235
           + +D S+P+ ++P    TN   S+  P  E++  G D
Sbjct: 116 VPTDNSSPSQFQPSPMSTNFAGSYLTPKSESSPVGSD 152


>U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 2, isoform a protein.
          Length = 283

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 125 IQSDRSTPALYEPYQPGTNLCVSFGAPHEEANS*GFD 235
           + +D S+P+ ++P    TN   S+  P  E++  G D
Sbjct: 200 VPTDNSSPSQFQPSPMSTNFAGSYLTPKSESSPVGSD 236


>AL110487-5|CAB54428.1|  237|Caenorhabditis elegans Hypothetical
           protein Y39E4B.6 protein.
          Length = 237

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -3

Query: 385 TKSQLIKSKNFSSSSQNACTSFCGNMKSSHRHLRYLVQSHVIC-DVPTTT 239
           T+SQL              T   G+ ++ +RHLR L+ +H I  D P T+
Sbjct: 172 TRSQLAAELLERDQDTQVLTRELGSKETENRHLRSLLSAHGISPDEPVTS 221


>AC024817-55|AAF59563.3|  366|Caenorhabditis elegans Hypothetical
           protein Y54G2A.28 protein.
          Length = 366

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 73  KYILRFNFGAPNFPVVFMIDVNTH 2
           KY+  FNFG P  P    +D+N +
Sbjct: 250 KYVPEFNFGYPQHPNFQQLDLNNN 273


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,984,039
Number of Sequences: 27780
Number of extensions: 228706
Number of successful extensions: 595
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)