Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30136X
         (465 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.40 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.40 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   0.93 
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    22   3.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   4.9  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    21   6.5  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    21   6.5  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   8.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 0.40
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 370 SAGSSCSDWQEDSTGTRSAKCS 435
           SAG+SC    E    TRSA C+
Sbjct: 26  SAGTSCKWLSEGGNDTRSADCT 47


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 0.40
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +1

Query: 289  DDGGCSSCYRKSSCTHFGCWRRNSYF*SAGSSCSDWQEDSTGTRSAKCS 435
            +DGGCSS    S+  +   +++N Y     SS S +      +  + C+
Sbjct: 924  NDGGCSSLVDVSTPVNKKVYKQNDYIVDESSSSSFYSSFLYKSSESSCN 972


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.8 bits (49), Expect = 0.93
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 107 QTYKCQIQSDRSTPALYEPYQP 172
           QT + Q+  DR++P  Y  Y P
Sbjct: 410 QTLRPQVSPDRTSPMEYRLYNP 431


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 296 PSSSVSCTVSRHL*CPH 246
           P+ S+ C   RH+  PH
Sbjct: 24  PTMSIKCNCKRHVIKPH 40


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -2

Query: 296 PSSSVSCTVSRHL*CPHYHGNQTLXSWLLHVARQTRHRDWC 174
           PS + SC+    L C      ++L +  L V R  RH D C
Sbjct: 320 PSQASSCSC---LDCDEIR--ESLDTQFLQVCRSRRHSDSC 355


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 427 SLTLYQYCLLASRS 386
           S+T Y YCLL + S
Sbjct: 69  SITCYMYCLLEAFS 82


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 427 SLTLYQYCLLASRS 386
           S+T Y YCLL + S
Sbjct: 69  SITCYMYCLLEAFS 82


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 344 QPKCVHELL 318
           +P C+HELL
Sbjct: 333 EPDCIHELL 341


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,395
Number of Sequences: 438
Number of extensions: 2669
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)