Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30136X
(465 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S ... 100 4e-22
At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) simi... 100 4e-22
At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A) 90 6e-19
At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to hom... 31 0.29
At2g02640.1 68415.m00203 DC1 domain-containing protein contain... 31 0.38
At3g28360.1 68416.m03544 ABC transporter family protein similar ... 29 1.2
At4g35730.1 68417.m05071 expressed protein contains Pfam profil... 28 2.7
At4g19865.1 68417.m02911 kelch repeat-containing F-box family pr... 28 2.7
At3g28415.1 68416.m03551 P-glycoprotein, putative contains ATP-b... 28 2.7
At3g28390.1 68416.m03547 P-glycoprotein, putative similar to P-g... 28 2.7
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 28 2.7
At1g05440.1 68414.m00552 expressed protein ; expression supporte... 28 2.7
At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative simil... 27 4.7
At3g54080.1 68416.m05979 expressed protein 27 4.7
At2g03140.1 68415.m00267 CAAX amino terminal protease family pro... 27 4.7
At1g32190.1 68414.m03959 expressed protein 27 4.7
At3g28380.1 68416.m03546 P-glycoprotein, putative similar to P-g... 27 6.2
At3g28345.1 68416.m03541 ABC transporter family protein similar ... 27 6.2
>At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S
ribosomal protein L18, Arabidopsis thaliana,
SWISSPROT:RL18_ARATH
Length = 187
Score = 100 bits (240), Expect = 4e-22
Identities = 47/72 (65%), Positives = 59/72 (81%)
Frame = +2
Query: 248 GDITNDVRLYKIPKMTVAALHVTAKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 427
G IT+D+R+++IP M V AL T +ARARI AGGE LTFDQLALRAP G+ TVL++G +
Sbjct: 83 GTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPK 142
Query: 428 NAREAVRHFGPA 463
N+REAV+HFGPA
Sbjct: 143 NSREAVKHFGPA 154
Score = 49.6 bits (113), Expect = 1e-06
Identities = 23/47 (48%), Positives = 35/47 (74%)
Frame = +3
Query: 114 TNAKFNQIVLRRLFMSRINRAPISVSRLARHMKKPTXEGLIAVVVGT 254
+N+ FN ++L+RLFMS++N+AP+S+SRL M + IAV+VGT
Sbjct: 40 SNSNFNAVILKRLFMSKVNKAPLSLSRLVEFM--TGKDDKIAVLVGT 84
>At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) similar
to GB:P42791
Length = 187
Score = 100 bits (240), Expect = 4e-22
Identities = 47/72 (65%), Positives = 59/72 (81%)
Frame = +2
Query: 248 GDITNDVRLYKIPKMTVAALHVTAKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 427
G IT+D+R+++IP M V AL T +ARARI AGGE LTFDQLALRAP G+ TVL++G +
Sbjct: 83 GTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPK 142
Query: 428 NAREAVRHFGPA 463
N+REAV+HFGPA
Sbjct: 143 NSREAVKHFGPA 154
Score = 54.0 bits (124), Expect = 5e-08
Identities = 26/47 (55%), Positives = 36/47 (76%)
Frame = +3
Query: 114 TNAKFNQIVLRRLFMSRINRAPISVSRLARHMKKPTXEGLIAVVVGT 254
TN+KFN ++L+RLFMS++N+AP+S+SRL M E IAV+VGT
Sbjct: 40 TNSKFNGVILKRLFMSKVNKAPLSLSRLVEFM--TGKEDKIAVLVGT 84
>At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A)
Length = 135
Score = 90.2 bits (214), Expect = 6e-19
Identities = 44/73 (60%), Positives = 54/73 (73%), Gaps = 1/73 (1%)
Frame = +2
Query: 248 GDITNDVRLYKIPKMTVAALHVTAKARARILAAGGEILTFDQLALRAPT-GKKTVLVQGQ 424
G +T+DVR+ +P +TV AL T ARARI AGGE LTFDQLAL PT + TVL++G
Sbjct: 30 GTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECLTFDQLALPCPTWSENTVLLRGP 89
Query: 425 RNAREAVRHFGPA 463
+N REAV+HFGPA
Sbjct: 90 KNTREAVKHFGPA 102
Score = 37.9 bits (84), Expect = 0.003
Identities = 18/33 (54%), Positives = 26/33 (78%)
Frame = +3
Query: 156 MSRINRAPISVSRLARHMKKPTXEGLIAVVVGT 254
MS++N+AP+S+SRL R+M +G IAV+VGT
Sbjct: 1 MSKVNKAPLSLSRLVRYM--DGKDGKIAVIVGT 31
>At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to
homeodomain transcription factor (AGL30) GI:3461830 from
[Arabidopsis thaliana]; contains Pfam domain PF00319:
SRF-type transcription factor (DNA-binding and
dimerisation domain); PMID: 12837945
Length = 389
Score = 31.5 bits (68), Expect = 0.29
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -2
Query: 458 GQSDALPHEHFADLVPVLSSCQSEHEEPADQ 366
G S LPH +PV SSC E +P DQ
Sbjct: 223 GDSSFLPHREMDGSIPVYSSCFFESTKPEDQ 253
>At2g02640.1 68415.m00203 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 627
Score = 31.1 bits (67), Expect = 0.38
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 301 CSSCYRKSSCTHFGCWRRNSYF 366
CS+C RKS+ + C+ RN YF
Sbjct: 423 CSACMRKSNGFGYSCYNRNCYF 444
>At3g28360.1 68416.m03544 ABC transporter family protein similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1158
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 353 EILTFDQLALRAPTGKKTVLVQGQRNAREAV 445
E L FD L L+ P+GK LV G + + V
Sbjct: 290 ETLIFDDLCLKIPSGKTVALVGGSGSGKSTV 320
>At4g35730.1 68417.m05071 expressed protein contains Pfam profile:
PF03398 eukaryotic protein of unknown function, DUF292
Length = 430
Score = 28.3 bits (60), Expect = 2.7
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 253 HHK*RETVQDTEDDGGCSSCYRKSSCTHFGCWRRNSYF*SAGSSCSDWQEDSTGTRS 423
HH + D SS Y K + G RR+SY + G + SD++E+ T T +
Sbjct: 276 HHHHHPGSRRQSRDSETSSYYAKPGAENRGMGRRHSYN-NPGINESDYEEEYTNTEA 331
>At4g19865.1 68417.m02911 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 393
Score = 28.3 bits (60), Expect = 2.7
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -3
Query: 451 VTHCLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQNACTSFC 317
V HCL IS Y L S+S +S L ++ +++ S T C
Sbjct: 38 VVHCLARISRLYYPTLSLVSKSFRSILSSTELYATRSHLGSTEQC 82
>At3g28415.1 68416.m03551 P-glycoprotein, putative contains
ATP-binding cassette; related to multi drug resistance
proteins
Length = 1221
Score = 28.3 bits (60), Expect = 2.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 365 FDQLALRAPTGKKTVLVQGQRNAREAV 445
FD L LR P+GK LV G + + V
Sbjct: 356 FDDLCLRIPSGKSVALVGGSGSGKSTV 382
>At3g28390.1 68416.m03547 P-glycoprotein, putative similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1225
Score = 28.3 bits (60), Expect = 2.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 365 FDQLALRAPTGKKTVLVQGQRNAREAV 445
FD L LR P+GK LV G + + V
Sbjct: 365 FDDLCLRVPSGKTVALVGGSGSGKSTV 391
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 28.3 bits (60), Expect = 2.7
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 265 RETVQDTEDDGGCSSCY--RKSSCTHFGCWRRNSYF*SAGSSCS 390
R+ + +E GGC+SC KS T C R+ + S G+ CS
Sbjct: 145 RDHGECSESVGGCASCIVRSKSDITTSQCGDRDRRYTSPGNPCS 188
>At1g05440.1 68414.m00552 expressed protein ; expression supported
by MPSS
Length = 393
Score = 28.3 bits (60), Expect = 2.7
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -3
Query: 442 CLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQNACTSF 320
CL S++ TL L +S+ ++L + NF S+ ++ TSF
Sbjct: 71 CLDSLNATLDLMPLSVQKSSLTKLSSASNFKSTVESTPTSF 111
>At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative similar
to SP|Q9ULA0 Aspartyl aminopeptidase (EC 3.4.11.21)
{Homo sapiens}; contains Pfam profile PF02127:
Aminopeptidase I zinc metalloprotease (M18)
Length = 526
Score = 27.5 bits (58), Expect = 4.7
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = +2
Query: 161 PYQPGTNLCVSFGAPHEEANS*GFDCRGSGDITNDVRLYKIPKMTVAALHVTAKARARIL 340
P++ +++ H ++ S G D S I D+ Y T H TA+A+ ++L
Sbjct: 37 PFRSFSSVSPILCTSHRDSRSPGSDSNAS--IVGDLLDYLNESWT--QFHATAEAKRQLL 92
Query: 341 AAGGEILT 364
AAG ++L+
Sbjct: 93 AAGFDLLS 100
>At3g54080.1 68416.m05979 expressed protein
Length = 350
Score = 27.5 bits (58), Expect = 4.7
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -2
Query: 245 YHGNQTLXSWLLHVARQTRHRDWCPV 168
Y GN L SW L V W PV
Sbjct: 229 YSGNVNLHSWSLEVRHSEYEHSWAPV 254
>At2g03140.1 68415.m00267 CAAX amino terminal protease family protein
very low similarity to SP|Q40863 Late embryogenesis
abundant protein EMB8 from Picea glauca; contains Pfam
profile PF02517 CAAX amino terminal protease family
protein
Length = 1805
Score = 27.5 bits (58), Expect = 4.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 107 QTYKCQIQSDRSTPALYEPYQPGTNLCVSFGA 202
+T Q SD++ PA+ EP QP N+ +F A
Sbjct: 916 ETKVMQPVSDQTKPAIQEPNQPNFNVSQAFEA 947
>At1g32190.1 68414.m03959 expressed protein
Length = 422
Score = 27.5 bits (58), Expect = 4.7
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +1
Query: 301 CSSCYRKSSCTHFGCWR 351
CSSC+ K C CW+
Sbjct: 359 CSSCFGKPKCPKCSCWK 375
>At3g28380.1 68416.m03546 P-glycoprotein, putative similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1240
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 353 EILTFDQLALRAPTGKKTVLVQGQRNAREAV 445
E FD L L+ P GK LV G + + V
Sbjct: 373 ETTIFDDLCLKIPAGKTVALVGGSGSGKSTV 403
>At3g28345.1 68416.m03541 ABC transporter family protein similar to
P-glycoprotein [Arabidopsis thaliana] GI:3849833;
contains Pfam profiles PF00005: ABC transporter,
PF00664: ABC transporter transmembrane region
Length = 1240
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 353 EILTFDQLALRAPTGKKTVLVQGQRNAREAV 445
E FD LR P+GK LV G + + V
Sbjct: 373 ETSIFDDFCLRVPSGKTVALVGGSGSGKSTV 403
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,355,082
Number of Sequences: 28952
Number of extensions: 213021
Number of successful extensions: 645
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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