Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30135
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    30   0.46 
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    27   4.3  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    26   5.7  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    26   5.7  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    25   9.9  

>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = +2

Query: 476 PHSTVKTFSENLTVNFLHLFIVWVLCI--LNSNTPYGLLTVRTCFPMCLESQPTTGYRMY 649
           P   ++   +N T+    L    VLC+  L + T    +T+  CF       PT G R  
Sbjct: 79  PSELIELLQKNHTIFPFELCEKIVLCLVLLKNKTVISPITLLQCFFPLFRENPTRGVREL 138

Query: 650 LYQ 658
           LYQ
Sbjct: 139 LYQ 141


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 179 ASSGLANILRVIRASAVRTVSDNNLRANIAECTIY-ACTTGLFNVNDT 39
           ASSG   I+ +  ASA+ T+SD +    + E   +    T ++N  D+
Sbjct: 388 ASSGHVLIIPIAHASALSTLSDTSYEKTLNEMNRFRKAVTDMYNACDS 435


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 228 ENSPSPLERLENIPAFWILGAFYVTTGPAATFATLLFRL 344
           EN    ++ LENI  FW+     +   P+ T  T+ F L
Sbjct: 825 ENMADDIDLLENIMPFWLGRLLLLNEFPSKTAPTVNFTL 863


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 214 DPVVERIRRAHLNDWRIFPHFGYSERFM*LLDRQ 315
           DP+  +    HLN+W+  P F + + +   LD+Q
Sbjct: 17  DPIAVKDAEGHLNNWKKEPGF-FGKLYSIFLDKQ 49


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +2

Query: 506 NLTVNFLHLFIV---WVLCILNSNTPYGLLTVR 595
           NLT+N  ++  V   W L  L SN  YGL+++R
Sbjct: 460 NLTLNMSYISFVMAAWKLYHLPSNWTYGLVSLR 492


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,507,891
Number of Sequences: 5004
Number of extensions: 75260
Number of successful extensions: 184
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)