Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30135
         (827 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0615 + 16216698-16216758,16218333-16218724                       31   1.5  
03_05_1101 - 30408944-30410410                                         29   3.4  
07_03_1394 + 26254438-26254950                                         28   7.9  
07_03_1011 + 23292086-23292149,23292407-23293663,23294312-232943...    28   7.9  

>05_03_0615 + 16216698-16216758,16218333-16218724
          Length = 150

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +1

Query: 145 MTRRIFANPEDAKMLRGGKVKYDDPVVERIRRAHLNDWRIFPH 273
           M R   +  E+A  +RGG    D+   ER RR   + WR  PH
Sbjct: 1   MAREARSAVEEATSVRGGAADLDNARKERRRRLLRSPWRPVPH 43


>03_05_1101 - 30408944-30410410
          Length = 488

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 251 FKWARRILSTTGSSYLTFPPLSIFASSGLANILRVIRASAVR 126
           F WA  I +  G   LTF P+ +F    + N++  +RA  +R
Sbjct: 132 FWWATDIAAELGVPRLTFSPVGVFPQLAMNNLV-TVRAEIIR 172


>07_03_1394 + 26254438-26254950
          Length = 170

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -2

Query: 406 EG*GNGITA*TMVCRIRNTVNNRKRSVANVAAG 308
           +G G+G  A   VCR+R  +  R+R VA  AAG
Sbjct: 26  DGDGDGEEAAAGVCRVRRQLRLRRRVVAAGAAG 58


>07_03_1011 +
           23292086-23292149,23292407-23293663,23294312-23294316,
           23294566-23294593,23294664-23294724,23295205-23295259
          Length = 489

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 21/76 (27%), Positives = 29/76 (38%)
 Frame = +2

Query: 401 AFKSYSFRHTLHHNAVHGYPSNPVLPHSTVKTFSENLTVNFLHLFIVWVLCILNSNTPYG 580
           A  SY+F    H     G   N    +ST    S +  +  +H F+  VL +L +  P  
Sbjct: 407 AVASYAFNDYYHRTRASGGTCNF---NSTAMVTSTDPRMAMVHAFLQEVLVLLAALAPMA 463

Query: 581 LLTVRTCFPMCLESQP 628
              VR   P C    P
Sbjct: 464 ATVVRRLGPRCKNVWP 479


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,709,739
Number of Sequences: 37544
Number of extensions: 444798
Number of successful extensions: 951
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)