Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30135
         (827 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10588| Best HMM Match : Sec63 (HMM E-Value=0)                       31   0.86 
SB_16065| Best HMM Match : zf-C3HC4 (HMM E-Value=0.91)                 31   1.5  
SB_19130| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_48591| Best HMM Match : Galactosyl_T (HMM E-Value=2.1e-33)          28   8.0  
SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57)               28   8.0  

>SB_10588| Best HMM Match : Sec63 (HMM E-Value=0)
          Length = 1047

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 140 HV*HEEYLLIQRMRKCSEEERSSTMTLSLREFAEP 244
           H+ H EYLL+Q+ +  SEE +S   T+ + E   P
Sbjct: 71  HIYHSEYLLLQKKQVLSEEPQSLVFTIPIFEPLPP 105


>SB_16065| Best HMM Match : zf-C3HC4 (HMM E-Value=0.91)
          Length = 399

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 359 YSAHHRLR-CYPITSAFKSYSFRHTLHHNA-VHGYPSNPVLPHSTVKT 496
           Y +HH L   + +TS F  Y+  H LHH + V  + +  +  H+ + T
Sbjct: 195 YISHHALLPTFRVTSHFSRYTSHHALHHTSRVASHTTRYISHHALIPT 242


>SB_19130| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 658

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +1

Query: 196 GKVKYDDPVVERIRRAHLN 252
           GK+KYDDP+ E++R+A  N
Sbjct: 373 GKMKYDDPLFEKVRQAKEN 391


>SB_48591| Best HMM Match : Galactosyl_T (HMM E-Value=2.1e-33)
          Length = 336

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/37 (32%), Positives = 25/37 (67%)
 Frame = -3

Query: 774 IRQP*HNVDNSDISVRMKLNYTTAITPSHDLSTEIVT 664
           IR    + +N+DI+VR KL +    + S+++++++VT
Sbjct: 93  IRSTWGDANNTDITVRWKLVFNLGQSSSNEINSQVVT 129


>SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57)
          Length = 1121

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 563 SNTPYGLLTVRTCFPMCLESQPTTGYRMYLYQH-NVTISVD 682
           S+TP G+  +RT    C E Q T G R  +  + NVT+  D
Sbjct: 431 SDTPAGVYVMRTNRQNCCELQDTKGSRFCVISNGNVTVERD 471


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,422,233
Number of Sequences: 59808
Number of extensions: 575294
Number of successful extensions: 1308
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1304
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)