Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30135
         (827 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   4.6  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.0  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.0  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.0  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.0  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.0  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.0  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    22   6.0  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   6.0  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   6.0  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   6.0  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   8.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   8.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   8.0  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   8.0  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +2

Query: 362 SAHHRLRCYPITSAFKSYSFRHTLHHNAVHGYPSNPVLPH 481
           SA H    YP T+ F   S+    HH + + +P     PH
Sbjct: 297 SACHSPGVYPSTAGFLPPSYHPHQHHPSQY-HPHRGSSPH 335


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 530 LFIVWVLCILNSNTPYGLLTVRT 598
           LF+ W+ C+L  + P   +T +T
Sbjct: 298 LFLQWLPCLLRMSRPGKKITKKT 320


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 530 LFIVWVLCILNSNTPYGLLTVRT 598
           LF+ W+ C+L  + P   +T +T
Sbjct: 298 LFLQWLPCLLRMSRPGKKITKKT 320


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 530 LFIVWVLCILNSNTPYGLLTVRT 598
           LF+ W+ C+L  + P   +T +T
Sbjct: 298 LFLQWLPCLLRMSRPGKKITKKT 320


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 530 LFIVWVLCILNSNTPYGLLTVRT 598
           LF+ W+ C+L  + P   +T +T
Sbjct: 298 LFLQWLPCLLRMSRPGKKITKKT 320


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 530 LFIVWVLCILNSNTPYGLLTVRT 598
           LF+ W+ C+L  + P   +T +T
Sbjct: 298 LFLQWLPCLLRMSRPGKKITKKT 320


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 530 LFIVWVLCILNSNTPYGLLTVRT 598
           LF+ W+ C+L  + P   +T +T
Sbjct: 298 LFLQWLPCLLRMSRPGKKITKKT 320


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 443 AVHGYPSNPVLPHSTVKTFSENLT 514
           ++ GYP NP L  +  K   E ++
Sbjct: 113 SLEGYPFNPCLTEAQYKEMEEKVS 136


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 530 LFIVWVLCILNSNTPYGLLTVRT 598
           LF+ W+ C+L  + P   +T +T
Sbjct: 366 LFLQWLPCLLRMSRPGKKITKKT 388


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 530 LFIVWVLCILNSNTPYGLLTVRT 598
           LF+ W+ C+L  + P   +T +T
Sbjct: 366 LFLQWLPCLLRMSRPGKKITKKT 388


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 443 AVHGYPSNPVLPHSTVKTFSENLT 514
           ++ GYP NP L  +  K   E ++
Sbjct: 129 SLEGYPFNPCLTEAQYKEMEEKVS 152


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = -2

Query: 754 C*QLGYFRPNEVKLHNSYNAESRFIYRDSNIVL 656
           C +  Y +   + LH+ Y+A+   +  + N V+
Sbjct: 93  CCRESYLKERHITLHHCYDADGIKLMNEENGVM 125


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 541 LGFVHTKFEHTIWSVNCKNLFSNVP 615
           LG +  K    + + NC++L ++VP
Sbjct: 431 LGELSEKLREDVINYNCRSLVASVP 455


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 541 LGFVHTKFEHTIWSVNCKNLFSNVP 615
           LG +  K    + + NC++L ++VP
Sbjct: 399 LGELSEKLREDVINYNCRSLVASVP 423


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = -2

Query: 754 C*QLGYFRPNEVKLHNSYNAESRFIYRDSNIVL 656
           C +  Y +   + LH+ Y+A+   +  + N V+
Sbjct: 93  CCRESYLKERHITLHHCYDADGIKLMNEENGVM 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,299
Number of Sequences: 438
Number of extensions: 5050
Number of successful extensions: 25
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)