Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30135
         (827 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05560.1 68414.m00573 UDP-glucose transferase (UGT75B2) simil...    31   0.93 
At1g79450.1 68414.m09259 LEM3 (ligand-effect modulator 3) family...    29   3.8  
At3g49350.1 68416.m05395 RabGAP/TBC domain-containing protein si...    29   5.0  
At1g05530.1 68414.m00567 UDP-glucoronosyl/UDP-glucosyl transfera...    28   6.6  
At1g43650.1 68414.m05011 integral membrane family protein / nodu...    28   8.7  

>At1g05560.1 68414.m00573 UDP-glucose transferase (UGT75B2) similar
           to UDP-glucose:indole-3-acetate
           beta-D-glucosyltransferase GI:2149127 from (Arabidopsis
           thaliana); identical to cDNA UDP-glucosyltransferase
           (UGT75B2) GI:13661274
          Length = 469

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 19/62 (30%), Positives = 33/62 (53%)
 Frame = -1

Query: 299 HIKRSEYPKCGNILQSFKWARRILSTTGSSYLTFPPLSIFASSGLANILRVIRASAVRTV 120
           H     +P  G++  S ++ARR++  TG+       +S+F +S +AN  +V   S + T 
Sbjct: 5   HFLLVTFPAQGHVNPSLRFARRLIKRTGARVTFVTCVSVFHNSMIANHNKVENLSFL-TF 63

Query: 119 SD 114
           SD
Sbjct: 64  SD 65


>At1g79450.1 68414.m09259 LEM3 (ligand-effect modulator 3) family
           protein / CDC50 family protein similar to GI:4966357;
           GI:4585976; GI:11994416; GI:9757735 from [Arabidopsis
           thaliana]
          Length = 350

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = -1

Query: 290 RSEYPKCGNILQSFKWARRILSTTGSSYLTFPPLSIFASSGLANILRVIRASAVRTVSDN 111
           + E P C  IL   +W        G  ++    + +FAS G+  I+       + T S N
Sbjct: 35  QQELPACKPILTP-RWVILTFLVAGVVFIPLGVICLFASQGVVEIVDRYDTDCIPTSSRN 93

Query: 110 NLRANI 93
           N+ A I
Sbjct: 94  NMVAYI 99


>At3g49350.1 68416.m05395 RabGAP/TBC domain-containing protein
           similar to GTPase activating protein [Yarrowia
           lipolytica] GI:2370595; contains Pfam profile PF00566:
           TBC domain
          Length = 554

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 789 CFVG*IRQP*HNVDNSDISVRMKLNYTTAITPSHD 685
           CFVG +++  HN    ++ +R +LN  + I  S D
Sbjct: 387 CFVGFMKKARHNFRLDEVGIRRQLNIVSKIIKSKD 421


>At1g05530.1 68414.m00567 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 455

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -1

Query: 299 HIKRSEYPKCGNILQSFKWARRILSTTGSSYLTFPPLSIFASSGLAN 159
           H     +P  G++  S ++ARR++ TTG+       LS+   S + N
Sbjct: 5   HFLLVTFPAQGHVNPSLRFARRLIKTTGARVTFATCLSVIHRSMIPN 51


>At1g43650.1 68414.m05011 integral membrane family protein / nodulin
           MtN21-related similar to MtN21 GI:2598575 (root nodule
           development) from [Medicago truncatula]similar to MtN21
           GI:2598575 (root nodule development) from [Medicago
           truncatula]
          Length = 343

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +3

Query: 333 LFRLFTVFRILHTIVYAVIPLPQPSR-AIAFGIPYIIMLYMGIQV--ILYYL 479
           L  L  +F  + + V+AV     PS   I FG+P + M Y GI V  + Y+L
Sbjct: 209 LVALQCLFSCIQSAVWAVAVNRNPSVWKIEFGLPLLSMAYCGIMVTGLTYWL 260


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,864,568
Number of Sequences: 28952
Number of extensions: 373369
Number of successful extensions: 831
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)