Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30134X
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    28   1.0  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   2.3  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    26   3.1  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    26   3.1  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    25   5.4  
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    25   7.2  

>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 179 ASSGFANILRVIRASAVRTISDNNLRANIAECTIY-ACTTGLFNVNDT 39
           ASSG   I+ +  ASA+ T+SD +    + E   +    T ++N  D+
Sbjct: 388 ASSGHVLIIPIAHASALSTLSDTSYEKTLNEMNRFRKAVTDMYNACDS 435


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
 Frame = -1

Query: 386  NSVNDGVQT----TEHGKQSEKKRYECCCRSSTHIKRSEYPKCGNILQSFKWSRRI 231
            N +NDG+ +     +  + S KK+         H K +    C N   ++ WSR +
Sbjct: 1773 NFINDGISSLVLLADENELSIKKKVTLMFNELLHFKETVGLLCKNSFNNYFWSREV 1828


>SPBC2F12.05c |||sterol binding ankyrin repeat
            protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -3

Query: 342  IGKEALRMLLPVQYSHKT---LRVSKMREYSPIVQVVSAN 232
            IGK+  +M LPV ++  T    RV++  EY+ ++   S N
Sbjct: 946  IGKDMTKMTLPVSFNEPTSLLQRVAEDMEYTELLDQASHN 985


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 9/36 (25%), Positives = 22/36 (61%)
 Frame = -1

Query: 356 EHGKQSEKKRYECCCRSSTHIKRSEYPKCGNILQSF 249
           E+ K+S++    C C +  ++ + ++ + GNI+ +F
Sbjct: 614 EYEKESKRSDIVCICTNDANVDKHKFLQDGNIVITF 649


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 214 DPVVERIRRDHLNDWRIFPHFGYSERFM*VLDRQ 315
           DP+  +    HLN+W+  P F + + +   LD+Q
Sbjct: 17  DPIAVKDAEGHLNNWKKEPGF-FGKLYSIFLDKQ 49


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = +2

Query: 362 SAHHRLRCYPITSAFKSYSFRHTLH---HNAVHGYPSNPVLPHSTVKTFSENLTVNFLH 529
           S  HR+ C   +++  SY+ ++ +H     +   Y  NP L        ++ L+V F H
Sbjct: 52  SCRHRMECLSRSTSQSSYADQNQVHLDSERSFFQYKLNPFLLRKHRSQLTKLLSVVFKH 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,186,544
Number of Sequences: 5004
Number of extensions: 43072
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)