Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30134X
         (536 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0118 + 41176159-41178909                                         30   1.0  
05_03_0615 + 16216698-16216758,16218333-16218724                       29   1.8  
12_02_1112 + 26162188-26162877,26163263-26163634                       29   3.1  

>01_07_0118 + 41176159-41178909
          Length = 916

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 16/65 (24%), Positives = 32/65 (49%)
 Frame = -1

Query: 269 GNILQSFKWSRRILSTTGSSYLTFPPLSICASSGFANILRVIRASAVRTISDNNLRANIA 90
           G+ L++F++    L+    S      LS+C +    ++ + I   A++ + + NLR   A
Sbjct: 554 GDALEAFQFMHSTLTLNPDSITLVSVLSVCGNLKLQSLGKSIHCMALKRLIEFNLRVKNA 613

Query: 89  ECTIY 75
             T+Y
Sbjct: 614 LLTMY 618


>05_03_0615 + 16216698-16216758,16218333-16218724
          Length = 150

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +1

Query: 145 MTRRIFANPEDAQMLRGGKVKYDDPVVERIRRDHLNDWRIFPH 273
           M R   +  E+A  +RGG    D+   ER RR   + WR  PH
Sbjct: 1   MAREARSAVEEATSVRGGAADLDNARKERRRRLLRSPWRPVPH 43


>12_02_1112 + 26162188-26162877,26163263-26163634
          Length = 353

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 401 LR*WDNSVNDGVQTTEHGKQSEKKRYECCCRSSTHIKRSEYPKC 270
           +R WD  +    +TT   + + K R  C   SS + K +EY  C
Sbjct: 293 IRIWDARMIAKEKTTPLAEANTKARLTCLAGSSLNCKSTEYSSC 336


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,754,105
Number of Sequences: 37544
Number of extensions: 268242
Number of successful extensions: 611
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)