Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30134X
         (536 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41994| Best HMM Match : F-box (HMM E-Value=1.4e-06)                 31   0.45 
SB_20796| Best HMM Match : RVT_1 (HMM E-Value=0.047)                   30   1.4  
SB_51905| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     29   1.8  
SB_16065| Best HMM Match : zf-C3HC4 (HMM E-Value=0.91)                 29   2.4  
SB_10588| Best HMM Match : Sec63 (HMM E-Value=0)                       29   3.2  
SB_21101| Best HMM Match : F-box (HMM E-Value=0.0024)                  29   3.2  
SB_19130| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_12399| Best HMM Match : DUF885 (HMM E-Value=2.3e-08)                28   5.6  
SB_12395| Best HMM Match : FG-GAP (HMM E-Value=7e-07)                  28   5.6  
SB_242| Best HMM Match : AFP (HMM E-Value=0.45)                        27   7.3  

>SB_41994| Best HMM Match : F-box (HMM E-Value=1.4e-06)
          Length = 1020

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -3

Query: 315  LPVQYSHKTLRVSKMREYSPIVQVVSANSLNDRVIVLDLSSSEHLRILWIRKYSSC 148
            +P    H  + +++M+    +    + +S  DR++      S HL  LWI  Y SC
Sbjct: 893  IPFAQEHFDVFLTRMQSLRSLCLAANDSSGTDRIVRKIAQHSRHLESLWIVYYHSC 948


>SB_20796| Best HMM Match : RVT_1 (HMM E-Value=0.047)
          Length = 660

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 389 DNSVNDGVQTTEHGKQSEKKRYECCCRSSTHIKRSEYPKC 270
           +N+ N+      +   S+K  +  CCR+S  +KR    KC
Sbjct: 157 NNNNNNNNNNNNNNNNSKKASFTSCCRNSKLLKRRHPSKC 196


>SB_51905| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 928

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 368 VQTTEHGKQSEKKRYECCCRSSTHIKRSEYPKCGNILQSFKWSRR 234
           V  T+ G   E+ R  C  R  TH+K+ +    GN+  S+ + RR
Sbjct: 321 VSDTKEGDHLERGRLTCGARVFTHLKKHQLNHEGNV--SYSYGRR 363


>SB_16065| Best HMM Match : zf-C3HC4 (HMM E-Value=0.91)
          Length = 399

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 362 SAHHRLRCYPITSAFKSYSFRHTLHHNA-VHGYPSNPVLPHSTVKT 496
           S H  L  + +TS F  Y+  H LHH + V  + +  +  H+ + T
Sbjct: 197 SHHALLPTFRVTSHFSRYTSHHALHHTSRVASHTTRYISHHALIPT 242


>SB_10588| Best HMM Match : Sec63 (HMM E-Value=0)
          Length = 1047

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 140 HV*HEEYLRIQRMRKCSEEERSSTMTLSLRE 232
           H+ H EYL +Q+ +  SEE +S   T+ + E
Sbjct: 71  HIYHSEYLLLQKKQVLSEEPQSLVFTIPIFE 101


>SB_21101| Best HMM Match : F-box (HMM E-Value=0.0024)
          Length = 287

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -1

Query: 188 SICASSGFANILRVIRASAVRTISDNNLRA 99
           S+C+ + F N L+VI  +   +ISD+++RA
Sbjct: 186 SVCSLASFCNKLKVILLNGCYSISDDSVRA 215


>SB_19130| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 658

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = +1

Query: 196 GKVKYDDPVVERIRR 240
           GK+KYDDP+ E++R+
Sbjct: 373 GKMKYDDPLFEKVRQ 387


>SB_12399| Best HMM Match : DUF885 (HMM E-Value=2.3e-08)
          Length = 718

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 360 SLHTIVYAVIPLPQPSRAIAFGIPYIIMLY-MGIQVILY 473
           SLH + +  I  P P   I + +P++++ Y +   VI Y
Sbjct: 529 SLHPVPFMFITYPVPLMVITYPVPFMVITYPVPFMVITY 567


>SB_12395| Best HMM Match : FG-GAP (HMM E-Value=7e-07)
          Length = 458

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 404 FKSYSFRHTLHHNAVHGYPSNPVLPHSTVKTFSENLTVNFL 526
           F +Y+   T          S+PV   ST++TFS NL+V+ L
Sbjct: 329 FIAYTTTDTNGQTKAGSVTSHPVRSCSTLETFSSNLSVSLL 369


>SB_242| Best HMM Match : AFP (HMM E-Value=0.45)
          Length = 147

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 355 SVVCTPSFTLLSHYLSLQEL*LS-AYLTS*CCTWVSK*SCITSQHC 489
           S  CT S+T  + Y S      + +Y  +   TW++  +C TS  C
Sbjct: 97  SYTCTTSYTCTTSYTSTTSYTCTTSYTCTTSYTWITSYTCTTSYTC 142


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,569,984
Number of Sequences: 59808
Number of extensions: 331767
Number of successful extensions: 941
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)