Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30134X
         (536 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006631-5|AAF39790.3|  469|Caenorhabditis elegans Acetylcholine...    28   4.9  
U97015-9|AAB52349.1|  343|Caenorhabditis elegans Hypothetical pr...    27   6.5  
U58739-2|AAB00608.1|  391|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>AC006631-5|AAF39790.3|  469|Caenorhabditis elegans Acetylcholine
           receptor protein 21 protein.
          Length = 469

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 419 FRHTLHHNAVHGYPSNPVLPHSTVKTFSENLTV 517
           F   +HH  VHGYP  P L     +  S+ L V
Sbjct: 290 FTVNIHHTGVHGYPVPPFLQIFAFRYLSKILFV 322


>U97015-9|AAB52349.1|  343|Caenorhabditis elegans Hypothetical
           protein F48C1.8 protein.
          Length = 343

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 235 RRDHLNDWRIFPHFGYSERFM*VLDRQQHS*RFFSDCLP 351
           RR + N +  +P++GY+ R    +D      RF+ DC P
Sbjct: 113 RRGYNNGYYGYPNYGYTCRVSQFVDYVGRVPRFYCDCPP 151


>U58739-2|AAB00608.1|  391|Caenorhabditis elegans Hypothetical
           protein F28C10.4 protein.
          Length = 391

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/59 (27%), Positives = 32/59 (54%)
 Frame = -3

Query: 318 LLPVQYSHKTLRVSKMREYSPIVQVVSANSLNDRVIVLDLSSSEHLRILWIRKYSSCHT 142
           LL  + ++  +R+S  R  SPI+ ++    + + + VLDL++     IL + + + C T
Sbjct: 141 LLGWEQTYPQIRISA-RYGSPIIDLLKLVDIKNGMFVLDLNTGLGENILEMPRIAKCQT 198


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,101,955
Number of Sequences: 27780
Number of extensions: 245308
Number of successful extensions: 750
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)