Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30134X
         (536 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54150.1 68414.m06173 zinc finger (C3HC4-type RING finger) fa...    29   2.0  
At1g09340.1 68414.m01045 expressed protein                             28   3.4  
At4g39060.1 68417.m05532 F-box family protein low similarity to ...    27   6.0  
At4g12820.1 68417.m02010 F-box family protein similar to F-box p...    27   6.0  
At5g45210.1 68418.m05549 disease resistance protein (TIR-NBS-LRR...    27   7.9  

>At1g54150.1 68414.m06173 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 383

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 320 CCCRSSTHIKRSEYPKCGNILQSFKWSRRI 231
           CC R ++ ++R   PKC   LQS + S R+
Sbjct: 351 CCRRCASTVERELNPKCPVCLQSIRGSMRV 380


>At1g09340.1 68414.m01045 expressed protein
          Length = 378

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -1

Query: 266 NILQSFKWSRRILSTTGSSYLTFPPLS-ICASSG 168
           N+L + K SR I + +G  Y+TF  L+  CA +G
Sbjct: 259 NVLGNEKASREIFNISGEKYVTFDGLAKACAKAG 292


>At4g39060.1 68417.m05532 F-box family protein low similarity to
           SKP1 interacting partner 6 [Arabidopsis thaliana]
           GI:10716957; contains Pfam profile PF00646: F-box domain
          Length = 375

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 248 KWSRRILSTTGSSYLTFPPLSICASSG 168
           K +R +L    SSY  FPP  ICA  G
Sbjct: 87  KSTRNLLVPVPSSYTPFPPNLICAEVG 113


>At4g12820.1 68417.m02010 F-box family protein similar to F-box
           protein family, AtFBX7 (GI:20197899) [Arabidopsis
           thaliana]
          Length = 442

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +1

Query: 151 RRIFANPEDAQMLRGGKVKYDDPV--VERIRRDHLNDWRIFPHFGYSER 291
           +R++ N  D     G  +K D+ V  V+  RRD+L  W I   FGY ++
Sbjct: 195 KRVYENVSD-----GSCIKIDNAVLWVDEKRRDYLVVWNISRLFGYHKK 238


>At5g45210.1 68418.m05549 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 697

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 191 EEERSSTMTLSLREFAETT*TIGEYSRILDTRSVLCE 301
           + E    +   +RE  + T  IG YSR+L+   +LC+
Sbjct: 150 DSEFVEKIVADVREVLDATGKIGIYSRLLEIEKLLCK 186


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,192,359
Number of Sequences: 28952
Number of extensions: 219471
Number of successful extensions: 575
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)