Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30133
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr...    35   0.011
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.8  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.7  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   8.7  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    25   8.7  

>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
           glycotransferase subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 34.7 bits (76), Expect = 0.011
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +1

Query: 124 HSQFFKSLQERGYGLTFKLADDANLVLSKYGEYLYKNLIVFAPSCSSL 267
           +S F +SL +R + +      D +  L +YGE LY NLI+ +    SL
Sbjct: 35  YSTFLQSLTDRDFDVKTSYIKDESAKLFEYGERLYDNLILLSSQSKSL 82


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 337  LPAIRRFPPSSMNLVMASLSTCPPNSST 254
            +P++ + PPSS+    A  ST PP+ S+
Sbjct: 1498 IPSVAQQPPSSVAPATAPSSTLPPSQSS 1525


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
 Frame = -2

Query: 451 SPSSVTS*LKWSMT-AADSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNLVMASLST 275
           S SS +S    S T ++ SSS S+P S + ++ +S +++         SSM+   +S S+
Sbjct: 276 SSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMS-SSSSFSS 334

Query: 274 CPPNSSTKV 248
            P +SS+ +
Sbjct: 335 SPTSSSSTI 343


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 382 PHSEAISLYTSPAAALPAIRRFPPSSMNLVMASLSTCPPNSST 254
           P+S   +  T+PA+A P      PS+ N    S S+   N  T
Sbjct: 388 PNSSTSNPSTAPASASPLASTLKPSTANDTNGSSSSSSSNPRT 430


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -2

Query: 412 TAADSSSISNPHSEAISLYTSPAAALPAIRRFPPSS 305
           T A SS  S  HSE I+  TS +         PPSS
Sbjct: 106 TKATSSRTSYDHSEGITSTTSASPPSAPAPPLPPSS 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,365,387
Number of Sequences: 5004
Number of extensions: 47656
Number of successful extensions: 166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)