Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30133
(608 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0771 + 5917550-5917829,5918390-5918526,5918617-5918742,591... 74 8e-14
04_03_0052 + 10257109-10257337,10257580-10257668,10257708-102582... 31 0.94
03_02_0955 - 12690405-12690842,12690940-12691130,12691208-126917... 30 1.6
05_04_0443 - 21283680-21283940,21284044-21284118,21284620-212846... 29 2.2
08_02_0749 - 20769224-20770535,20770649-20771510,20771622-207732... 29 3.8
09_04_0286 + 16400695-16401369,16401473-16401658,16402115-164025... 28 5.0
02_05_1305 - 35586499-35586601,35586963-35587034,35587111-355872... 28 5.0
01_01_0977 - 7717808-7717837,7718227-7718327,7718449-7718548,771... 28 6.7
06_02_0173 - 12601025-12601071,12601632-12601698,12601857-126019... 27 8.8
>07_01_0771 +
5917550-5917829,5918390-5918526,5918617-5918742,
5919168-5919221,5919344-5919457,5919895-5919950,
5920017-5920058,5920580-5920655,5920765-5920836,
5920908-5921033,5921117-5921221,5921333-5921416,
5921636-5921683
Length = 439
Score = 74.1 bits (174), Expect = 8e-14
Identities = 32/56 (57%), Positives = 43/56 (76%)
Frame = +1
Query: 88 LVLIDNLNIKETHSQFFKSLQERGYGLTFKLADDANLVLSKYGEYLYKNLIVFAPS 255
LVL+D+L ++ +HS FF SLQ RG+ L F+LADD L L +YG+YLY L++FAPS
Sbjct: 36 LVLVDDLAVRSSHSAFFASLQGRGFDLDFRLADDPKLSLHRYGQYLYDGLVLFAPS 91
Score = 66.1 bits (154), Expect = 2e-11
Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Frame = +3
Query: 264 FGGQVDSEAITKFIDDXXXXXXXXXXXXXDVYREIASECGFEMDEE-SAAVIDHFNYDVT 440
FGG VD +I +FID D+ R IA+ECG + DE+ A VIDH NY T
Sbjct: 95 FGGSVDQNSILEFIDAGHDMILAADSSASDLIRGIATECGVDFDEDPEAMVIDHINYAAT 154
Query: 441 D-EGDHTRIVVSPKNLIKAPTIVGNR 515
D EGDHT +++ +LI++ I+G++
Sbjct: 155 DAEGDHT--LIAGDDLIQSDVILGSK 178
Score = 32.3 bits (70), Expect = 0.31
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2
Query: 524 PLLFEGTGLIVDKANSLVLPILSADSTA 607
P+LF G G V+ +NSLVL +LSA +A
Sbjct: 183 PVLFRGIGHAVNPSNSLVLKVLSASPSA 210
>04_03_0052 +
10257109-10257337,10257580-10257668,10257708-10258289,
10258477-10258668,10259392-10259563,10260190-10260461,
10260682-10260801,10260912-10260968,10261631-10261831,
10262451-10262511,10262712-10263013
Length = 758
Score = 30.7 bits (66), Expect = 0.94
Identities = 19/74 (25%), Positives = 29/74 (39%)
Frame = -2
Query: 406 ADSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNLVMASLSTCPPNSSTKVRIL*DSC 227
AD S+++N + A+ P P S+ + + PP R++ SC
Sbjct: 524 ADRSNVNNSDATALHTQERPVHTPETTNEIDPKSV--ITSEKENRPPTKQRLRRLIIRSC 581
Query: 226 INILRILTGQDLHH 185
NIL L HH
Sbjct: 582 NNILSWLKNHHRHH 595
>03_02_0955 -
12690405-12690842,12690940-12691130,12691208-12691718,
12692240-12693171,12693260-12693351,12693430-12693509,
12693568-12693621,12693734-12693850,12693949-12694194,
12694273-12694432,12694512-12694576,12694686-12694877,
12694980-12695061,12695153-12695925
Length = 1310
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Frame = -2
Query: 382 PHSEAISLYTS--PAAALPAIRRFPPSSMNLVMASLS-TCPPN 263
P +E++ S P+AA P ++ PP ++ V++SLS PPN
Sbjct: 23 PTAESVLRVASRDPSAAAPLLQALPPDGLDDVLSSLSPASPPN 65
>05_04_0443 -
21283680-21283940,21284044-21284118,21284620-21284649,
21286744-21287247
Length = 289
Score = 29.5 bits (63), Expect = 2.2
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -2
Query: 514 LFPTIVGALIRFLGDTTMRVWSPSSVTS*LKWSMTAA--DSSSISNPHSEAISLY 356
LFP VGALI L D + VT L WS AA S+ NP +A++LY
Sbjct: 220 LFPLDVGALICMLKDNVLLKIIAVVVT--LAWSSWAAYPFMSAAVNPRRKALALY 272
>08_02_0749 - 20769224-20770535,20770649-20771510,20771622-20773263,
20773357-20773701,20773858-20773952,20774218-20774344,
20774430-20774435
Length = 1462
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +3
Query: 3 WLENQNENHNNFRDIDHFFNACLRGS*NFSSNR*LKYQRNAFTI 134
W+EN N + +R ++N L G N + K Q N F +
Sbjct: 1065 WVENSNNSRTTWRKSPDYYNYGLPGPRNAAEAAVAKMQSNGFVV 1108
>09_04_0286 +
16400695-16401369,16401473-16401658,16402115-16402575,
16402678-16402836,16402914-16403265,16403360-16403653
Length = 708
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -2
Query: 370 AISLYTSPAAALPAIRRFPPSSMNLVMASLSTCPPNSS 257
AISLYTSP F PSS ST PP++S
Sbjct: 5 AISLYTSPPPGAVYSSEFDPSSRG-SSPPCSTAPPSTS 41
>02_05_1305 -
35586499-35586601,35586963-35587034,35587111-35587232,
35587767-35587826,35587919-35587997,35588219-35588307,
35588405-35588492,35591761-35591821,35592546-35592890,
35593094-35594351
Length = 758
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/76 (25%), Positives = 31/76 (40%)
Frame = -2
Query: 409 AADSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNLVMASLSTCPPNSSTKVRIL*DS 230
A S+++ PH+ L SP+ + R P + S PP+ D+
Sbjct: 14 AVIKSTLTQPHNHHHLLAASPSLLAAVLHRLSPLPSTALAFFRSLPPPHPL-------DA 66
Query: 229 CINILRILTGQDLHHP 182
+ +LR+L HHP
Sbjct: 67 SLALLRLLAPHPRHHP 82
>01_01_0977 -
7717808-7717837,7718227-7718327,7718449-7718548,
7718706-7718822,7718913-7718990,7719980-7720058,
7720184-7720249,7720373-7720441,7720890-7721188
Length = 312
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -1
Query: 389 LKSTF*SDFSIYVSGRGVTSHKKVSAIVYEFGYGLTVYLSTKLEHE 252
LK F FSI V G +T+ + + G + Y+ K+E E
Sbjct: 256 LKRVFVIGFSIIVFGNRITTQTGIGTCIAIAGVAIYSYIKAKIEEE 301
>06_02_0173 -
12601025-12601071,12601632-12601698,12601857-12601934,
12602235-12602396,12603309-12603440,12604604-12604656,
12605808-12606372
Length = 367
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 376 SEAISLYTSPAAALPAIRRFPPSSMNLVMASLSTCPPNSSTK 251
S ++ Y AA+ PA R+ PP+S ++ PP S K
Sbjct: 134 SSGLAAYGGAAASQPAPRQAPPASGRVLPHKKRGRPPGSGNK 175
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,957,193
Number of Sequences: 37544
Number of extensions: 300379
Number of successful extensions: 932
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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