Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30133
         (608 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1970| Best HMM Match : DDOST_48kD (HMM E-Value=0)                   88   6e-18
SB_48704| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)                   29   2.9  
SB_5014| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-07)           29   3.9  
SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)               29   3.9  
SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_4525| Best HMM Match : Sugar_tr (HMM E-Value=0.028)                 27   9.0  

>SB_1970| Best HMM Match : DDOST_48kD (HMM E-Value=0)
          Length = 415

 Score = 87.8 bits (208), Expect = 6e-18
 Identities = 39/61 (63%), Positives = 48/61 (78%)
 Frame = +1

Query: 73  ADHETLVLIDNLNIKETHSQFFKSLQERGYGLTFKLADDANLVLSKYGEYLYKNLIVFAP 252
           A   TLVL+DN N KETHS FF SL+ +GY LTF+ ADDA+L L KYGE+LY NL++F+P
Sbjct: 26  AGQRTLVLLDNANTKETHSIFFSSLKAKGYELTFRTADDASLALVKYGEFLYDNLVIFSP 85

Query: 253 S 255
           S
Sbjct: 86  S 86



 Score = 85.4 bits (202), Expect = 3e-17
 Identities = 42/97 (43%), Positives = 53/97 (54%)
 Frame = +3

Query: 255 VLEFGGQVDSEAITKFIDDXXXXXXXXXXXXXDVYREIASECGFEMDEESAAVIDHFNYD 434
           V EFGG ++  AIT FID              D  RE+ SECG E DEE  AVIDH ++D
Sbjct: 87  VEEFGGSLNVRAITDFIDGGGNVLVAASSAIGDPLRELGSECGVEFDEEKTAVIDHISHD 146

Query: 435 VTDEGDHTRIVVSPKNLIKAPTIVGNRIHSLCYLKAL 545
           V+D   HT +V  P N+IKA T+ G  + S    K +
Sbjct: 147 VSDLDQHTLVVAEPSNVIKADTVTGKTVTSPLLFKGV 183


>SB_48704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1044

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 21/89 (23%), Positives = 39/89 (43%)
 Frame = -1

Query: 470  YYNASVVSLISHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSGRGVTSHKKVSAIVYEFGY 291
            Y N  + +++SH+    + DCC  L        +D  +Y+    V +  K       F Y
Sbjct: 860  YLNLIIKTMMSHLWASSL-DCCYILK-------ADDDVYIRVPSVIAWLKARRSHSRF-Y 910

Query: 290  GLTVYLSTKLEHEGANTMRFLYKYSPYFD 204
            G  +Y ++++  +  +      KY PYF+
Sbjct: 911  GGDIYTNSEISRDPCSPWGISKKYYPYFE 939


>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
          Length = 3037

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 441 DEGDHTRIVVSPKNLIKAPTIVGNRIHSLC 530
           D+GD    V+SP++L+K+P +  + +  LC
Sbjct: 632 DDGDDPMYVISPEDLLKSPDMCKSFLSFLC 661


>SB_5014| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-07)
          Length = 194

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 21/89 (23%), Positives = 39/89 (43%)
 Frame = -1

Query: 470 YYNASVVSLISHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSGRGVTSHKKVSAIVYEFGY 291
           Y N  + +++SH+    + DCC  L        +D  +Y+    V +  K       F Y
Sbjct: 10  YLNLIIKTMMSHLWASSL-DCCYILK-------ADDDVYIRVPRVIAWLKARRSHSRF-Y 60

Query: 290 GLTVYLSTKLEHEGANTMRFLYKYSPYFD 204
           G  +Y ++++  +  +      KY PYF+
Sbjct: 61  GGDIYTNSEISRDPCSPWGISKKYYPYFE 89


>SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
          Length = 1242

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 412 TAADSSSISNPHSEAISLYTSPAAALP 332
           TA   S+I++PH+  +S  T+PAA  P
Sbjct: 476 TAQTRSAITSPHAYTVSSVTAPAATSP 502


>SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1069

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 22/66 (33%), Positives = 32/66 (48%)
 Frame = -2

Query: 451 SPSSVTS*LKWSMTAADSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNLVMASLSTC 272
           SP+S TS +K S  ++ S+    P  +  S   S  + LP      P++ N   +SLST 
Sbjct: 107 SPASPTS-IKQSPNSSSSTG-QTPTEKTDSTPKSSGSTLPTSST--PATQNPTDSSLSTK 162

Query: 271 PPNSST 254
           PP   T
Sbjct: 163 PPTKKT 168


>SB_4525| Best HMM Match : Sugar_tr (HMM E-Value=0.028)
          Length = 630

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/72 (18%), Positives = 34/72 (47%)
 Frame = -1

Query: 464 NASVVSLISHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSGRGVTSHKKVSAIVYEFGYGL 285
           +A +   +++++ E ++      +        D+S+   G+ +T HK+  A   EF  G+
Sbjct: 550 SAIIAGAMTYLLPETLFAKMHQTIEQTEAAEDDYSVVCCGKPLTRHKQTKAQAVEFKDGV 609

Query: 284 TVYLSTKLEHEG 249
            +     ++++G
Sbjct: 610 VLTNFETVQNKG 621


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,369,327
Number of Sequences: 59808
Number of extensions: 349837
Number of successful extensions: 870
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)