Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30133
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    24   1.0  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    24   1.0  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    24   1.0  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    24   1.0  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    24   1.0  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   9.4  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   9.4  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   9.4  

>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 101 IT*ISKKRIHNSSNHYK 151
           I+ +S K IHN++N+YK
Sbjct: 82  ISSLSNKTIHNNNNNYK 98


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 101 IT*ISKKRIHNSSNHYK 151
           I+ +S K IHN++N+YK
Sbjct: 82  ISSLSNKTIHNNNNNYK 98


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 101 IT*ISKKRIHNSSNHYK 151
           I+ +S K IHN++N+YK
Sbjct: 82  ISSLSNKTIHNNNNNYK 98


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 101 IT*ISKKRIHNSSNHYK 151
           I+ +S K IHN++N+YK
Sbjct: 82  ISSLSNKTIHNNNNNYK 98


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 101 IT*ISKKRIHNSSNHYK 151
           I+ +S K IHN++N+YK
Sbjct: 315 ISSLSNKTIHNNNNNYK 331


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 522 SLCYLKALDLLWTRLTA 572
           SLC++  LD   TRL A
Sbjct: 129 SLCFVYPLDFARTRLAA 145


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +3

Query: 12  NQNENHNNFRDIDHFFN 62
           N N N+NN+ + ++ +N
Sbjct: 329 NYNNNYNNYNNYNNNYN 345


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 522 SLCYLKALDLLWTRLTA 572
           SLC++  LD   TRL A
Sbjct: 129 SLCFVYPLDFARTRLAA 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,736
Number of Sequences: 438
Number of extensions: 3229
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)