Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30133
         (608 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66680.1 68418.m08406 dolichyl-diphosphooligosaccharide-prote...    79   3e-15
At5g61420.2 68418.m07707 myb family transcription factor (MYB28)...    28   4.2  
At5g61420.1 68418.m07706 myb family transcription factor (MYB28)...    28   4.2  
At3g06500.1 68416.m00754 beta-fructofuranosidase, putative / inv...    28   4.2  
At5g27870.1 68418.m03343 pectinesterase family protein similar t...    27   7.4  
At2g45210.1 68415.m05629 auxin-responsive protein-related weakly...    27   7.4  
At2g42330.1 68415.m05239 D111/G-patch domain-containing protein ...    27   7.4  
At5g59300.1 68418.m07430 ubiquitin-conjugating enzyme 7 (UBC7) E...    27   9.7  
At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN ...    27   9.7  

>At5g66680.1 68418.m08406 dolichyl-diphosphooligosaccharide-protein
           glycosyltransferase 48kDa subunit family protein similar
           to SP|Q05052 Dolichyl-diphosphooligosaccharide--protein
           glycosyltransferase 48 kDa subunit precursor (EC
           2.4.1.119) (Oligosaccharyl transferase 48 kDa subunit)
           {Canis familiaris}; contains Pfam profile PF03345:
           Dolichyl-diphosphooligosaccharide-protein
           glycosyltransferase 48kD subunit
          Length = 437

 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 33/60 (55%), Positives = 46/60 (76%)
 Frame = +1

Query: 76  DHETLVLIDNLNIKETHSQFFKSLQERGYGLTFKLADDANLVLSKYGEYLYKNLIVFAPS 255
           D   LVL+D+L++K +HS FF +L+ RG+ L FKLA+D+ L L +YG+YLY  LI+FAPS
Sbjct: 30  DRRVLVLLDDLSLKSSHSIFFNTLKSRGFDLDFKLAEDSKLALQRYGQYLYDGLIIFAPS 89



 Score = 64.9 bits (151), Expect = 4e-11
 Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
 Frame = +3

Query: 264 FGGQVDSEAITKFIDDXXXXXXXXXXXXXDVYREIASECGFEMDEESAA-VIDHFNYDVT 440
           FGG +DS++I  F+D              D+ R IA+ECG + DE+S+A VIDH ++ V+
Sbjct: 93  FGGSLDSKSIADFVDSGRDLILSADTAASDLIRGIATECGVDFDEDSSAMVIDHTSFSVS 152

Query: 441 D-EGDHTRIVVSPKNLIKAPTIVG 509
           D +GDHT  +++  +L+K+  I+G
Sbjct: 153 DVDGDHT--LIAADDLVKSDVILG 174



 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 524 PLLFEGTGLIVDKANSLVLPILSADSTA 607
           P+LF G    ++  N+LVL +LSA  +A
Sbjct: 181 PVLFRGVAHSLNPTNNLVLKVLSASPSA 208


>At5g61420.2 68418.m07707 myb family transcription factor (MYB28)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 366

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/50 (26%), Positives = 30/50 (60%)
 Frame = -2

Query: 394 SISNPHSEAISLYTSPAAALPAIRRFPPSSMNLVMASLSTCPPNSSTKVR 245
           ++++P++ +     S ++++P + R PPSS N+V + +S    N  T ++
Sbjct: 140 NLNSPNASSSDKQYSRSSSMPFLSRPPPSSCNMV-SKVSELSSNDGTPIQ 188


>At5g61420.1 68418.m07706 myb family transcription factor (MYB28)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 287

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/50 (26%), Positives = 30/50 (60%)
 Frame = -2

Query: 394 SISNPHSEAISLYTSPAAALPAIRRFPPSSMNLVMASLSTCPPNSSTKVR 245
           ++++P++ +     S ++++P + R PPSS N+V + +S    N  T ++
Sbjct: 61  NLNSPNASSSDKQYSRSSSMPFLSRPPPSSCNMV-SKVSELSSNDGTPIQ 109


>At3g06500.1 68416.m00754 beta-fructofuranosidase, putative /
           invertase, putative / saccharase, putative /
           beta-fructosidase, putative similar to neutral invertase
           [Daucus carota] GI:4200165; contains Pfam profile
           PF04853: Plant neutral invertase
          Length = 664

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 440 SHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSGRGVTSHK 324
           S I V  +  CCRFL+  +S+    FS   SG+ + S K
Sbjct: 5   SCICVSAMKPCCRFLISFRSSSLFGFSPPNSGKFINSSK 43


>At5g27870.1 68418.m03343 pectinesterase family protein similar to
           pectinesterase (EC 3.1.1.11) from Salix gilgiana
           GI:6714532, Lycopersicon esculentum SP|Q43143, Phaseolus
           vulgaris SP|Q43111; contains Pfam profile PF01095
           pectinesterase
          Length = 732

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 23/80 (28%), Positives = 40/80 (50%)
 Frame = -2

Query: 505 TIVGALIRFLGDTTMRVWSPSSVTS*LKWSMTAADSSSISNPHSEAISLYTSPAAALPAI 326
           T+ G+ +    +TT    SPS+V +      T+  +  + +P S+  S   SP+ +LPA 
Sbjct: 572 TVTGSSLS--SNTTESSDSPSTVVT----PSTSPPAGHLGSP-SDTPSSVVSPSTSLPAG 624

Query: 325 RRFPPSSMNLVMASLSTCPP 266
           +   P +   ++ S ST PP
Sbjct: 625 QLGAPPATPSMVVSPSTSPP 644


>At2g45210.1 68415.m05629 auxin-responsive protein-related weakly
           similar to small auxin up RNA (GI:546362) {Arabidopsis
           thaliana}
          Length = 162

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
 Frame = -1

Query: 362 SIYVSGRGVTSHKKVSAIVYEFGYGLTVYLSTKLE------HEGANTMRFLYKYSPYFDR 201
           +IYV  +    H+ +  IVY F + L   L  + E      HEG  T+  LY       +
Sbjct: 85  AIYVGQKDGDCHRVLVPIVY-FNHPLFGELLREAEKEYGFCHEGGITIPCLYSDFERV-K 142

Query: 200 TRFASSASLKVKP*PRSCND 141
           TR AS +S +V P  R C +
Sbjct: 143 TRIASGSSSRVFPWGRHCRN 162


>At2g42330.1 68415.m05239 D111/G-patch domain-containing protein
           similar to SP|Q9ERA6 Tuftelin-interacting protein 11
           {Mus musculus}; contains Pfam profile PF01585: G-patch
           domain
          Length = 752

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -2

Query: 424 KWSMTAADSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNLVMASLST 275
           K  +   D+ SIS P+S+ +S    PA  +  I  + P     ++  L T
Sbjct: 382 KMLLEVEDNQSISTPYSQLVSEVILPAVRVSGINTWEPRDPEPMLRLLET 431


>At5g59300.1 68418.m07430 ubiquitin-conjugating enzyme 7 (UBC7) E2;
           identical to gi:992703, SP:P42747
          Length = 198

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -1

Query: 236 RFLYKYSPYFDRTRFASSASLKVKP*PRSCNDLKNCECVSLIFKLSI 96
           RFLY + P+  +  F+   + K  P   S    ++C+C + IF+ S+
Sbjct: 26  RFLYHHHPWLRKLAFSFRNNSKASPWNLSPYQNQSCDCYN-IFEWSV 71


>At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN
           protein (ETT) identical to ETTIN GB:AF007788 from
           [Arabidopsis thaliana]
          Length = 608

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 12  NQNENHNNFRDIDH 53
           NQN NHNNF ++ H
Sbjct: 274 NQNMNHNNFSEVAH 287


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,262,872
Number of Sequences: 28952
Number of extensions: 248432
Number of successful extensions: 666
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)