Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30132
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    27   2.1  
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb...    27   2.1  
SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.4  

>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 419 FFNHK*TKDNEKTRETFEFGGRGFCLNLLKNIF 321
           F NH   ++   ++ETF FGG   C N    +F
Sbjct: 674 FLNHSNFENIALSKETFNFGGEANCENTDTTLF 706


>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 240

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 622 VQRLCFIFPHLCTFTDTK-QLINHRYYTFTPE 714
           +Q++C +F H  T  DT+ Q++   Y+  +PE
Sbjct: 161 LQQICVVFKHKQTSQDTRFQILEFFYFYLSPE 192


>SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 148

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 372 GFPRFFIIFSLLVIKKIMGFYDLVTKTFRSYLIL 473
           GFP  FI F +L +K +       T+T R + ++
Sbjct: 13  GFPPLFIAFQILSMKALARMIPDTTRTCRGHFLV 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,480,357
Number of Sequences: 5004
Number of extensions: 44131
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)