Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30132
         (735 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42840.1 68418.m05221 DC1 domain-containing protein contains ...    31   0.60 
At3g28740.1 68416.m03588 cytochrome P450 family protein contains...    29   2.4  
At4g39756.1 68417.m05630 kelch repeat-containing F-box family pr...    28   5.6  
At5g51660.1 68418.m06405 cleavage and polyadenylation specificit...    28   7.4  
At3g28050.1 68416.m03501 nodulin MtN21 family protein similar to...    27   9.8  

>At5g42840.1 68418.m05221 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 671

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +2

Query: 80  LQLPFRHQRAVRIHSGFVGDCDKCNRGG--RCAPRVRRLVH 196
           L+LP+     +++  G    CD CN  G   C PR R ++H
Sbjct: 118 LKLPWHDHPLIKVDLGANMPCDFCNESGIDYCCPRCRFMIH 158


>At3g28740.1 68416.m03588 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome P450
          Length = 509

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = -1

Query: 210 FFIFI*TSLRTRGAQRPPRLHLSQSPTNPEWILTALWCLK 91
           FF FI  SL+     RP +L+L  SP+ P  I+  L  LK
Sbjct: 18  FFFFIFLSLKLLFGPRPRKLNLPPSPSRPFPIIGHLHLLK 57


>At4g39756.1 68417.m05630 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 374

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 604 RIPRSYVQRLCFIFPHLCTFTDTKQLINHRYYTFTPEETLN 726
           RIP+SY  +L  +    C+   + +L   R Y  T E+ L+
Sbjct: 34  RIPKSYYPKLSLVCKSFCSLILSMELYVERLYLGTHEDVLH 74


>At5g51660.1 68418.m06405 cleavage and polyadenylation specificity
           factor (CPSF) A subunit C-terminal domain-containing
           protein similar to SP|Q9EPU4 Cleavage and
           polyadenylation specificity factor, 160 kDa subunit
           (CPSF 160 kDa subunit) {Mus musculus}; contains Pfam
           profile PF03178: CPSF A subunit region
          Length = 1442

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 113 RIHSGFVGDCDKCNRGGRCAPRVRRLVHINIKNL 214
           ++ SG VGD D  + GG  + RV     IN+++L
Sbjct: 211 QVGSGLVGDDDAFSSGGTVSARVESSYIINLRDL 244


>At3g28050.1 68416.m03501 nodulin MtN21 family protein similar to
           MtN21 [Medicago truncatula] GI:2598575; contains Pfam
           profile PF00892: Integral membrane protein
          Length = 367

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 171 AQRPPRLHLSQSPTNPEWILTA 106
           A+ PP + L    TNP WIL A
Sbjct: 162 AKSPPSVSLRSQSTNPNWILGA 183


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,748,477
Number of Sequences: 28952
Number of extensions: 225925
Number of successful extensions: 477
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)