Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30131
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch...    27   3.9  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    26   5.1  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    26   6.8  
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    26   6.8  
SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family...    26   6.8  

>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
           dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -3

Query: 642 EIASVVKRKDKFGGLHFFNPVPVMRLLEVVKGSETSEATYKT 517
           E++ V     +F GLHF     V R L    G   +   Y+T
Sbjct: 250 EVSKVCFNHPEFAGLHFTGSTAVFRSLWGTIGENVANGKYRT 291


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +2

Query: 371 INVSS*CISSFVQPNGFTYVRHQQSIHNETRGVLASDTGLADRLSPSIIVLYV-ASDVSL 547
           + + S   S+F+  N    + H   +     G+ + D        PS+ VLY+ A+++ L
Sbjct: 172 LTLDSNLFSNFISSNTVLLIPHLTQLSVNGCGLNSKDVQWITETFPSLEVLYLEANEIIL 231

Query: 548 PLTTSSKRI 574
              TS K +
Sbjct: 232 SKATSFKNL 240


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 21/48 (43%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = +1

Query: 157 YFFSYL*KPSP-VFTPNFP-SATSFSSKGMGLKSCDPET-SCASH-PR 288
           YF S    P+P V+  N P SATSF        S DP T   A H PR
Sbjct: 356 YFQSSSNSPAPYVYRNNLPPSATSFQPSSSRSPSVDPNTVKSAQHIPR 403


>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 160 FFSYL*KPSPVFTPNFPSA 216
           FF +L   SP+FT NFP A
Sbjct: 272 FFRFLCLASPLFTMNFPMA 290


>SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 20/68 (29%), Positives = 26/68 (38%)
 Frame = +1

Query: 112 CLRSNVVCLCLIISIYFFSYL*KPSPVFTPNFPSATSFSSKGMGLKSCDPETSCASHPR* 291
           C  +NV+    I S  F   L  P+P       S   FS+ G+G  S       + H   
Sbjct: 133 CFETNVIGQLAITSALFPLLLQDPNPHVVNIASSLAYFSAMGVGAYSSSKAALVSLHETL 192

Query: 292 TCLCLSQH 315
               LSQH
Sbjct: 193 EEEVLSQH 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,066,940
Number of Sequences: 5004
Number of extensions: 66642
Number of successful extensions: 171
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)