Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30131
(764 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19701| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 5e-08
SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 1e-06
SB_17988| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_53765| Best HMM Match : 3HCDH_N (HMM E-Value=9.2e-12) 35 0.062
SB_48497| Best HMM Match : THAP (HMM E-Value=0.00088) 31 1.3
SB_23072| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_36188| Best HMM Match : FMN_bind (HMM E-Value=0.51) 29 5.4
SB_34718| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_21575| Best HMM Match : Trypsin (HMM E-Value=0) 29 5.4
SB_52432| Best HMM Match : NDUF_B7 (HMM E-Value=0.47) 28 7.2
SB_15301| Best HMM Match : Kelch_1 (HMM E-Value=0) 28 9.5
>SB_19701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 509
Score = 55.2 bits (127), Expect = 5e-08
Identities = 28/70 (40%), Positives = 43/70 (61%)
Frame = -3
Query: 762 LVVEAIVENIGVKHKLFKQLDGVAPSHTIFASNTSSLSITEIASVVKRKDKFGGLHFFNP 583
+V+EA+ E++G+KHK+ K+++ P H +FASNTSSL IT+ K+ D F P
Sbjct: 252 MVIEAVFEDLGIKHKVIKEVEQYIPEHCVFASNTSSLPITQEGVGPKQLDSL-SKQFGFP 310
Query: 582 VPVMRLLEVV 553
V + L + V
Sbjct: 311 VGSVTLADEV 320
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = -1
Query: 239 IPLLEKLVAEGKLGVKTGEGFY 174
I +L+ LVA G LG K+G+GF+
Sbjct: 345 INVLKSLVAGGNLGRKSGKGFF 366
>SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 812
Score = 50.8 bits (116), Expect = 1e-06
Identities = 25/79 (31%), Positives = 44/79 (55%)
Frame = -3
Query: 762 LVVEAIVENIGVKHKLFKQLDGVAPSHTIFASNTSSLSITEIASVVKRKDKFGGLHFFNP 583
L+ EA +EN+ VK +FK + ++ + A+NT +L + +A V ++ G+ F P
Sbjct: 85 LIFEATIENLEVKKSVFKSISQFCRTNAVIATNTLALDTSVVAEHVTNPERCLGIRFLYP 144
Query: 582 VPVMRLLEVVKGSETSEAT 526
V + +E+ GS+TS T
Sbjct: 145 VYSIPEVEITLGSQTSPET 163
>SB_17988| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 53
Score = 37.9 bits (84), Expect = 0.009
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = -3
Query: 762 LVVEAIVENIGVKHKLFKQLDGVAP 688
LV+EAIVEN+ KHKLF LD AP
Sbjct: 28 LVIEAIVENLRTKHKLFTALDEAAP 52
>SB_53765| Best HMM Match : 3HCDH_N (HMM E-Value=9.2e-12)
Length = 120
Score = 35.1 bits (77), Expect = 0.062
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Frame = -3
Query: 753 EAIVENIGVKHKLFKQLDG-VAPSHTIFASNTSSLSITEIASVVKRKDKFGGLHFFNPVP 577
E EN+ +K K+F+ L+ ++ S I AS+TS + ++ ++ + + H NP
Sbjct: 1 ECTPENLELKKKVFQNLEATLSSSEVILASSTSCIMPSKFTESLQLRQRCIVAHPINPPY 60
Query: 576 VMRLLEVVKGSETS----EATYKTMMD-GES 499
+ L+EV+ T E T K M D G+S
Sbjct: 61 YVPLVEVIPAPWTDASVIEQTIKLMKDIGQS 91
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -2
Query: 502 KSVGKTCITCK-DTPGFVVNRLLVPYICEAIRLYE 401
K +G++ + K +T GF+VNRL I EA RL E
Sbjct: 86 KDIGQSPVLLKKETNGFIVNRLQYALIAEAWRLVE 120
>SB_48497| Best HMM Match : THAP (HMM E-Value=0.00088)
Length = 866
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 345 TPWVH*NWPTMLA*TQTSLSWMAGTRSFRITTLQT 241
TPW W ++ T+T+L + G S + TLQT
Sbjct: 788 TPWYEGFWERLIGLTKTTLKKVLGRASINLVTLQT 822
>SB_23072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 730
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 345 TPWVH*NWPTMLA*TQTSLSWMAGTRSFRITTLQT 241
TPW W ++ T+T+L + G S + TLQT
Sbjct: 317 TPWYEGFWERLIGLTKTTLKKVLGRASINLVTLQT 351
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Frame = +1
Query: 451 QRNQGCPCK*YRSCRPTFPIH----HSFVCSFRCLT 546
+ +Q CP + SC+P+ P+H HS C C T
Sbjct: 1282 EHSQSCPKICFTSCKPSCPVHCCSEHSNACPQECST 1317
>SB_36188| Best HMM Match : FMN_bind (HMM E-Value=0.51)
Length = 486
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +1
Query: 574 HWDRIEEMKTAKFVFPFYDGCNFGYR*RRRV*CENSVTWSYAIKLLKQFMLHSNI 738
H I E V F G N R R+ + N++TW+ AI+L F+L ++
Sbjct: 100 HCGFIGETLNKNLVEQFISGINHRDRERKLLQKGNALTWAKAIQLANTFLLFEDL 154
>SB_34718| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 322
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 181 PSPVFTPNFPSATSFSSKGMGLKSCDPETS 270
PSP T PSAT+ + + SCD TS
Sbjct: 30 PSPSTTATLPSATNSTQSSTTIFSCDSRTS 59
>SB_21575| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 696
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 362 EARRWLPHGSTRTGRLCWLRHKQVY 288
E RW+ HG+T G+ C +H VY
Sbjct: 516 EEGRWVLHGATSFGKSCSPKHYSVY 540
>SB_52432| Best HMM Match : NDUF_B7 (HMM E-Value=0.47)
Length = 1250
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = -2
Query: 499 SVGKTCITCKDTPGFVVNRLLVPYICEAIRLYERGDASARDIDIAMKL 356
++ K C K PGF++++ L P I +R + + D A + +
Sbjct: 32 NIKKACSDPKSRPGFLMDKALEPSIKYIVRKFPQMDTKATQLQAVQSI 79
>SB_15301| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 590
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +2
Query: 602 PPNLSFLFTTDAISVIDREDVFDAKI 679
P N++ LF++D ISV + E V++A +
Sbjct: 177 PKNVAILFSSDEISVENEEKVYEALV 202
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,395,013
Number of Sequences: 59808
Number of extensions: 502471
Number of successful extensions: 1281
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1280
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -