Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30131
         (764 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    33   0.002
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    23   3.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   4.1  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           22   7.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.5  

>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 33.5 bits (73), Expect = 0.002
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -2

Query: 472 KDTPGFVVNRLLVPYICEAIRLYERGDASARDIDIAMKLGAG 347
           ++  GFV+NR+    + EA RL   G  +A+D+D  M  G G
Sbjct: 3   REIDGFVLNRIQYAILNEAWRLVADGILNAKDVDAVMSEGLG 44


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 457 FVVNRLLVPYICEAIRLYERGDASARDIDI 368
           FVV  L++P  CEA+   +R    AR  D+
Sbjct: 19  FVVILLIIPSKCEAVS-NDRQSLEARSADL 47


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 747 IVENIGVKHKLFKQLDGVAPSHTIFASNTSSLSIT 643
           +V   G KH    +   VA S+   +SN+ SLS+T
Sbjct: 22  VVSVAGYKHSRRHRDFTVAESYDASSSNSDSLSMT 56


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 370 IAMKLGAGYPMGPLELAD 317
           +A +LG+G PMG   L D
Sbjct: 2   LAFQLGSGTPMGAKYLMD 19


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 399 LSYNLMASHM*GTNSLFTTKPGVSL 473
           L Y L+++ + G N+LFT  PG  L
Sbjct: 48  LEYFLLSAFLFGANALFT--PGQEL 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,587
Number of Sequences: 438
Number of extensions: 5239
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)