Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30130X
         (309 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH comple...    26   1.1  
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo...    26   1.5  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    25   1.9  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    25   1.9  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   2.6  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    24   5.9  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    23   7.9  

>SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH complex
           subunit Tfb2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 447

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +2

Query: 266 ERWESVLHYMVGS 304
           E WE++LH+MVG+
Sbjct: 137 ETWETILHFMVGT 149


>SPAC9E9.10c |cbh1|cbh|centromere binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 514

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 7   VPQAVVTSWVSQTYAKEQAKACTTLSEL 90
           +PQ  VT W  +TY K+ ++  +T+SE+
Sbjct: 27  IPQKEVTEWFRKTYNKDLSQ--STISEI 52


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 254 SRNDTSGAFPSGSSDDDMLHAXPPRSNDTLRFFLNDCASIQPGMPPG 114
           S+N+TSGA P  S++ ++  A  P +   L F       + PG   G
Sbjct: 247 SKNNTSGANPPSSNNQEVTSAPIPAAPIVLPFQQPFYPIVCPGCAQG 293


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 136 SSPACPPVWAPPATRRAL 83
           S+P  PPVWAP     AL
Sbjct: 177 STPTPPPVWAPTIVSSAL 194


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
 Frame = -2

Query: 293 CSAARTPSVPAVRSRNDTSGAFPSGSSDDDMLHAXPPRSNDTLRFFLNDC--ASIQPGMP 120
           C+  R P  P  + RN+TS    +G +  +  +     +ND      N+   A+ Q  + 
Sbjct: 433 CAICRAPVDPNSQQRNNTSTDSANGHNPSNHANPSTSTTNDQGATLRNESFNAASQSNLS 492

Query: 119 PGMGASCHTESSDSV 75
              G S  T   D V
Sbjct: 493 SEHGHSSRTPMDDFV 507


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -2

Query: 230 FPSGSSDDDMLHAXPPRSNDTLRFFL 153
           +P+ S+++ +    PP  N   +FFL
Sbjct: 213 YPTSSNEETISSVKPPSPNSDSKFFL 238


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 142 AQSFKKNLKVSLLRGGXAWSMSSSLEPDGK 231
           AQSFK++ +V+L+  G A+    + +  GK
Sbjct: 568 AQSFKQDEEVTLMDWGNAYVREINRDASGK 597


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.127    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,374,745
Number of Sequences: 5004
Number of extensions: 24806
Number of successful extensions: 60
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)