Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30130X
(309 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y07595-1|CAA68870.1| 462|Homo sapiens transcription factor TFII... 78 6e-15
BT007321-1|AAP35985.1| 462|Homo sapiens general transcription f... 78 6e-15
BC016302-1|AAH16302.1| 462|Homo sapiens general transcription f... 78 6e-15
BC004935-1|AAH04935.1| 462|Homo sapiens general transcription f... 78 6e-15
BA000025-65|BAB63317.1| 462|Homo sapiens Transcription factor I... 78 6e-15
AY124590-1|AAM64222.1| 462|Homo sapiens general transcription f... 78 6e-15
AL773541-3|CAI18452.1| 462|Homo sapiens general transcription f... 78 6e-15
AL669830-2|CAI18003.1| 462|Homo sapiens general transcription f... 78 6e-15
AL662854-11|CAI17435.1| 462|Homo sapiens general transcription ... 78 6e-15
AK222607-1|BAD96327.1| 462|Homo sapiens general transcription f... 78 6e-15
AB209479-1|BAD92716.1| 1653|Homo sapiens VARS2L protein variant ... 78 6e-15
AB202101-1|BAE78622.1| 462|Homo sapiens general transcription f... 78 6e-15
AB103609-1|BAF31271.1| 462|Homo sapiens TFIIH protein protein. 78 6e-15
AB088103-1|BAC54936.1| 462|Homo sapiens transcription factor II... 78 6e-15
AL669830-1|CAM25402.1| 138|Homo sapiens general transcription f... 59 2e-09
AL662854-10|CAM24840.1| 138|Homo sapiens general transcription ... 59 2e-09
X71923-1|CAA50739.1| 750|Homo sapiens tenascin-X precursor prot... 31 0.69
U89337-3|AAB47488.1| 4289|Homo sapiens tenascin X protein. 31 0.69
AL772248-1|CAI18078.1| 4222|Homo sapiens tenascin XB protein. 31 0.69
AL662884-1|CAI18332.1| 4222|Homo sapiens tenascin XB protein. 31 0.69
AL662849-16|CAI17471.1| 4222|Homo sapiens tenascin XB protein. 31 0.69
AL662828-1|CAI17414.1| 4222|Homo sapiens tenascin XB protein. 31 0.69
AL645922-1|CAI41718.1| 4222|Homo sapiens tenascin XB protein. 31 0.69
AL049547-2|CAB89296.1| 4288|Homo sapiens dJ34F7.1.1 (tenascin XB... 31 0.69
BC015202-1|AAH15202.2| 561|Homo sapiens CENPT protein protein. 31 0.91
BC007642-1|AAH07642.1| 558|Homo sapiens CENPT protein protein. 31 0.91
AK055082-1|BAB70851.1| 139|Homo sapiens protein ( Homo sapiens ... 31 0.91
AK023173-1|BAB14445.1| 299|Homo sapiens protein ( Homo sapiens ... 31 0.91
U43148-1|AAC50496.1| 1296|Homo sapiens PTC protein. 30 1.6
AK126091-1|BAC86434.1| 161|Homo sapiens protein ( Homo sapiens ... 29 2.1
J03909-1|AAA36105.1| 303|Homo sapiens gamma-interferon-inducibl... 29 2.8
U59464-1|AAC50550.1| 1447|Homo sapiens PATCHED protein. 29 3.7
DQ013130-1|AAY67799.1| 2014|Homo sapiens leucine-rich repeat kin... 29 3.7
BC146769-1|AAI46770.1| 1369|Homo sapiens LRRK1 protein protein. 29 3.7
BC066655-1|AAH66655.1| 439|Homo sapiens LRRK1 protein protein. 29 3.7
AY395772-1|AAR21240.1| 345|Homo sapiens patched protein. 29 3.7
AY040829-1|AAK81886.1| 426|Homo sapiens DN p73 gamma protein. 29 3.7
AL161729-2|CAH73818.1| 1296|Homo sapiens patched homolog 1 (Dros... 29 3.7
AL161729-1|CAH73817.1| 1447|Homo sapiens patched homolog 1 (Dros... 29 3.7
AL136528-4|CAI19125.1| 426|Homo sapiens tumor protein p73 protein. 29 3.7
AK131075-1|BAC85125.1| 1112|Homo sapiens FLJ00262 protein protein. 29 3.7
AK124593-1|BAC85893.1| 242|Homo sapiens protein ( Homo sapiens ... 29 3.7
AK026772-1|BAB15547.1| 253|Homo sapiens protein ( Homo sapiens ... 29 3.7
AB058693-1|BAB47419.1| 1369|Homo sapiens KIAA1790 protein protein. 29 3.7
BC005408-1|AAH05408.2| 659|Homo sapiens LRRK1 protein protein. 28 4.8
AL358472-2|CAI14016.1| 1384|Homo sapiens DENN/MADD domain contai... 28 4.8
AB007945-1|BAA32321.3| 1626|Homo sapiens KIAA0476 protein protein. 28 4.8
AC093582-1|AAQ96869.1| 129|Homo sapiens unknown protein. 28 6.4
BC036335-1|AAH36335.1| 1151|Homo sapiens BTBD12 protein protein. 27 8.5
AF395237-1|AAL35186.1| 80|Homo sapiens dopamine receptor D4 pr... 27 8.5
AB058687-1|BAB47413.1| 1167|Homo sapiens KIAA1784 protein protein. 27 8.5
AB058677-1|BAB47410.1| 969|Homo sapiens MEGF11 protein (KIAA178... 27 8.5
>Y07595-1|CAA68870.1| 462|Homo sapiens transcription factor TFIIH
protein.
Length = 462
Score = 77.8 bits (183), Expect = 6e-15
Identities = 38/89 (42%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = +1
Query: 1 QPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLL 180
QP+PQA V WV + ++K Q ++ LS L +W +PGG+ G +L F++NL+++LL
Sbjct: 64 QPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALL 123
Query: 181 RGGXAWS-MSSSLEPDGKAPDVSFLERTA 264
GG AWS +S L PD A DV L++ A
Sbjct: 124 GGGKAWSDDTSQLGPDKHARDVPSLDKYA 152
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2
Query: 266 ERWESVLHYMVGS 304
ERWE VLH+MVGS
Sbjct: 154 ERWEVVLHFMVGS 166
>BT007321-1|AAP35985.1| 462|Homo sapiens general transcription
factor IIH, polypeptide 4, 52kDa protein.
Length = 462
Score = 77.8 bits (183), Expect = 6e-15
Identities = 38/89 (42%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = +1
Query: 1 QPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLL 180
QP+PQA V WV + ++K Q ++ LS L +W +PGG+ G +L F++NL+++LL
Sbjct: 64 QPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALL 123
Query: 181 RGGXAWS-MSSSLEPDGKAPDVSFLERTA 264
GG AWS +S L PD A DV L++ A
Sbjct: 124 GGGKAWSDDTSQLGPDKHARDVPSLDKYA 152
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2
Query: 266 ERWESVLHYMVGS 304
ERWE VLH+MVGS
Sbjct: 154 ERWEVVLHFMVGS 166
>BC016302-1|AAH16302.1| 462|Homo sapiens general transcription
factor IIH, polypeptide 4, 52kDa protein.
Length = 462
Score = 77.8 bits (183), Expect = 6e-15
Identities = 38/89 (42%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = +1
Query: 1 QPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLL 180
QP+PQA V WV + ++K Q ++ LS L +W +PGG+ G +L F++NL+++LL
Sbjct: 64 QPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALL 123
Query: 181 RGGXAWS-MSSSLEPDGKAPDVSFLERTA 264
GG AWS +S L PD A DV L++ A
Sbjct: 124 GGGKAWSDDTSQLGPDKHARDVPSLDKYA 152
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2
Query: 266 ERWESVLHYMVGS 304
ERWE VLH+MVGS
Sbjct: 154 ERWEVVLHFMVGS 166
>BC004935-1|AAH04935.1| 462|Homo sapiens general transcription
factor IIH, polypeptide 4, 52kDa protein.
Length = 462
Score = 77.8 bits (183), Expect = 6e-15
Identities = 38/89 (42%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = +1
Query: 1 QPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLL 180
QP+PQA V WV + ++K Q ++ LS L +W +PGG+ G +L F++NL+++LL
Sbjct: 64 QPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALL 123
Query: 181 RGGXAWS-MSSSLEPDGKAPDVSFLERTA 264
GG AWS +S L PD A DV L++ A
Sbjct: 124 GGGKAWSDDTSQLGPDKHARDVPSLDKYA 152
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2
Query: 266 ERWESVLHYMVGS 304
ERWE VLH+MVGS
Sbjct: 154 ERWEVVLHFMVGS 166
>BA000025-65|BAB63317.1| 462|Homo sapiens Transcription factor II H
protein.
Length = 462
Score = 77.8 bits (183), Expect = 6e-15
Identities = 38/89 (42%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = +1
Query: 1 QPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLL 180
QP+PQA V WV + ++K Q ++ LS L +W +PGG+ G +L F++NL+++LL
Sbjct: 64 QPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALL 123
Query: 181 RGGXAWS-MSSSLEPDGKAPDVSFLERTA 264
GG AWS +S L PD A DV L++ A
Sbjct: 124 GGGKAWSDDTSQLGPDKHARDVPSLDKYA 152
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2
Query: 266 ERWESVLHYMVGS 304
ERWE VLH+MVGS
Sbjct: 154 ERWEVVLHFMVGS 166
>AY124590-1|AAM64222.1| 462|Homo sapiens general transcription
factor IIH, polypeptide 4 (52kD subunit) protein.
Length = 462
Score = 77.8 bits (183), Expect = 6e-15
Identities = 38/89 (42%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = +1
Query: 1 QPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLL 180
QP+PQA V WV + ++K Q ++ LS L +W +PGG+ G +L F++NL+++LL
Sbjct: 64 QPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALL 123
Query: 181 RGGXAWS-MSSSLEPDGKAPDVSFLERTA 264
GG AWS +S L PD A DV L++ A
Sbjct: 124 GGGKAWSDDTSQLGPDKHARDVPSLDKYA 152
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2
Query: 266 ERWESVLHYMVGS 304
ERWE VLH+MVGS
Sbjct: 154 ERWEVVLHFMVGS 166
>AL773541-3|CAI18452.1| 462|Homo sapiens general transcription
factor IIH, polypeptide 4, 52kDa protein.
Length = 462
Score = 77.8 bits (183), Expect = 6e-15
Identities = 38/89 (42%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = +1
Query: 1 QPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLL 180
QP+PQA V WV + ++K Q ++ LS L +W +PGG+ G +L F++NL+++LL
Sbjct: 64 QPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALL 123
Query: 181 RGGXAWS-MSSSLEPDGKAPDVSFLERTA 264
GG AWS +S L PD A DV L++ A
Sbjct: 124 GGGKAWSDDTSQLGPDKHARDVPSLDKYA 152
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2
Query: 266 ERWESVLHYMVGS 304
ERWE VLH+MVGS
Sbjct: 154 ERWEVVLHFMVGS 166
>AL669830-2|CAI18003.1| 462|Homo sapiens general transcription
factor IIH, polypeptide 4, 52kDa protein.
Length = 462
Score = 77.8 bits (183), Expect = 6e-15
Identities = 38/89 (42%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = +1
Query: 1 QPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLL 180
QP+PQA V WV + ++K Q ++ LS L +W +PGG+ G +L F++NL+++LL
Sbjct: 64 QPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALL 123
Query: 181 RGGXAWS-MSSSLEPDGKAPDVSFLERTA 264
GG AWS +S L PD A DV L++ A
Sbjct: 124 GGGKAWSDDTSQLGPDKHARDVPSLDKYA 152
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2
Query: 266 ERWESVLHYMVGS 304
ERWE VLH+MVGS
Sbjct: 154 ERWEVVLHFMVGS 166
>AL662854-11|CAI17435.1| 462|Homo sapiens general transcription
factor IIH, polypeptide 4, 52kDa protein.
Length = 462
Score = 77.8 bits (183), Expect = 6e-15
Identities = 38/89 (42%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = +1
Query: 1 QPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLL 180
QP+PQA V WV + ++K Q ++ LS L +W +PGG+ G +L F++NL+++LL
Sbjct: 64 QPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALL 123
Query: 181 RGGXAWS-MSSSLEPDGKAPDVSFLERTA 264
GG AWS +S L PD A DV L++ A
Sbjct: 124 GGGKAWSDDTSQLGPDKHARDVPSLDKYA 152
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2
Query: 266 ERWESVLHYMVGS 304
ERWE VLH+MVGS
Sbjct: 154 ERWEVVLHFMVGS 166
>AK222607-1|BAD96327.1| 462|Homo sapiens general transcription
factor IIH, polypeptide 4, 52kDa variant protein.
Length = 462
Score = 77.8 bits (183), Expect = 6e-15
Identities = 38/89 (42%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = +1
Query: 1 QPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLL 180
QP+PQA V WV + ++K Q ++ LS L +W +PGG+ G +L F++NL+++LL
Sbjct: 64 QPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALL 123
Query: 181 RGGXAWS-MSSSLEPDGKAPDVSFLERTA 264
GG AWS +S L PD A DV L++ A
Sbjct: 124 GGGKAWSDDTSQLGPDKHARDVPSLDKYA 152
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2
Query: 266 ERWESVLHYMVGS 304
ERWE VLH+MVGS
Sbjct: 154 ERWEVVLHFMVGS 166
>AB209479-1|BAD92716.1| 1653|Homo sapiens VARS2L protein variant
protein.
Length = 1653
Score = 77.8 bits (183), Expect = 6e-15
Identities = 38/89 (42%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = +1
Query: 1 QPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLL 180
QP+PQA V WV + ++K Q ++ LS L +W +PGG+ G +L F++NL+++LL
Sbjct: 111 QPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALL 170
Query: 181 RGGXAWS-MSSSLEPDGKAPDVSFLERTA 264
GG AWS +S L PD A DV L++ A
Sbjct: 171 GGGKAWSDDTSQLGPDKHARDVPSLDKYA 199
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2
Query: 266 ERWESVLHYMVGS 304
ERWE VLH+MVGS
Sbjct: 201 ERWEVVLHFMVGS 213
>AB202101-1|BAE78622.1| 462|Homo sapiens general transcription
factor IIH, polypeptide 4, 52kDa protein.
Length = 462
Score = 77.8 bits (183), Expect = 6e-15
Identities = 38/89 (42%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = +1
Query: 1 QPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLL 180
QP+PQA V WV + ++K Q ++ LS L +W +PGG+ G +L F++NL+++LL
Sbjct: 64 QPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALL 123
Query: 181 RGGXAWS-MSSSLEPDGKAPDVSFLERTA 264
GG AWS +S L PD A DV L++ A
Sbjct: 124 GGGKAWSDDTSQLGPDKHARDVPSLDKYA 152
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2
Query: 266 ERWESVLHYMVGS 304
ERWE VLH+MVGS
Sbjct: 154 ERWEVVLHFMVGS 166
>AB103609-1|BAF31271.1| 462|Homo sapiens TFIIH protein protein.
Length = 462
Score = 77.8 bits (183), Expect = 6e-15
Identities = 38/89 (42%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = +1
Query: 1 QPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLL 180
QP+PQA V WV + ++K Q ++ LS L +W +PGG+ G +L F++NL+++LL
Sbjct: 64 QPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALL 123
Query: 181 RGGXAWS-MSSSLEPDGKAPDVSFLERTA 264
GG AWS +S L PD A DV L++ A
Sbjct: 124 GGGKAWSDDTSQLGPDKHARDVPSLDKYA 152
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2
Query: 266 ERWESVLHYMVGS 304
ERWE VLH+MVGS
Sbjct: 154 ERWEVVLHFMVGS 166
>AB088103-1|BAC54936.1| 462|Homo sapiens transcription factor II H
protein.
Length = 462
Score = 77.8 bits (183), Expect = 6e-15
Identities = 38/89 (42%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = +1
Query: 1 QPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLL 180
QP+PQA V WV + ++K Q ++ LS L +W +PGG+ G +L F++NL+++LL
Sbjct: 64 QPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALL 123
Query: 181 RGGXAWS-MSSSLEPDGKAPDVSFLERTA 264
GG AWS +S L PD A DV L++ A
Sbjct: 124 GGGKAWSDDTSQLGPDKHARDVPSLDKYA 152
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2
Query: 266 ERWESVLHYMVGS 304
ERWE VLH+MVGS
Sbjct: 154 ERWEVVLHFMVGS 166
>AL669830-1|CAM25402.1| 138|Homo sapiens general transcription
factor IIH, polypeptide 4, 52kDa protein.
Length = 138
Score = 59.3 bits (137), Expect = 2e-09
Identities = 25/62 (40%), Positives = 40/62 (64%)
Frame = +1
Query: 1 QPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLL 180
QP+PQA V WV + ++K Q ++ LS L +W +PGG+ G +L F++NL+++LL
Sbjct: 64 QPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALL 123
Query: 181 RG 186
G
Sbjct: 124 GG 125
>AL662854-10|CAM24840.1| 138|Homo sapiens general transcription
factor IIH, polypeptide 4, 52kDa protein.
Length = 138
Score = 59.3 bits (137), Expect = 2e-09
Identities = 25/62 (40%), Positives = 40/62 (64%)
Frame = +1
Query: 1 QPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLL 180
QP+PQA V WV + ++K Q ++ LS L +W +PGG+ G +L F++NL+++LL
Sbjct: 64 QPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALL 123
Query: 181 RG 186
G
Sbjct: 124 GG 125
>X71923-1|CAA50739.1| 750|Homo sapiens tenascin-X precursor
protein.
Length = 750
Score = 31.1 bits (67), Expect = 0.69
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +2
Query: 95 CGRRRPYRGACRAGCSHSRLKRTSKCHCFGEAXRG 199
CG+ P AC GC L R +C C E RG
Sbjct: 681 CGQEEPPASACPGGCGPRELCRAGQCVCV-EGFRG 714
>U89337-3|AAB47488.1| 4289|Homo sapiens tenascin X protein.
Length = 4289
Score = 31.1 bits (67), Expect = 0.69
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +2
Query: 95 CGRRRPYRGACRAGCSHSRLKRTSKCHCFGEAXRG 199
CG+ P AC GC L R +C C E RG
Sbjct: 678 CGQEEPPASACPGGCGPRELCRAGQCVCV-EGFRG 711
>AL772248-1|CAI18078.1| 4222|Homo sapiens tenascin XB protein.
Length = 4222
Score = 31.1 bits (67), Expect = 0.69
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +2
Query: 95 CGRRRPYRGACRAGCSHSRLKRTSKCHCFGEAXRG 199
CG+ P AC GC L R +C C E RG
Sbjct: 678 CGQEEPPASACPGGCGPRELCRAGQCVCV-EGFRG 711
>AL662884-1|CAI18332.1| 4222|Homo sapiens tenascin XB protein.
Length = 4222
Score = 31.1 bits (67), Expect = 0.69
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +2
Query: 95 CGRRRPYRGACRAGCSHSRLKRTSKCHCFGEAXRG 199
CG+ P AC GC L R +C C E RG
Sbjct: 678 CGQEEPPASACPGGCGPRELCRAGQCVCV-EGFRG 711
>AL662849-16|CAI17471.1| 4222|Homo sapiens tenascin XB protein.
Length = 4222
Score = 31.1 bits (67), Expect = 0.69
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +2
Query: 95 CGRRRPYRGACRAGCSHSRLKRTSKCHCFGEAXRG 199
CG+ P AC GC L R +C C E RG
Sbjct: 678 CGQEEPPASACPGGCGPRELCRAGQCVCV-EGFRG 711
>AL662828-1|CAI17414.1| 4222|Homo sapiens tenascin XB protein.
Length = 4222
Score = 31.1 bits (67), Expect = 0.69
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +2
Query: 95 CGRRRPYRGACRAGCSHSRLKRTSKCHCFGEAXRG 199
CG+ P AC GC L R +C C E RG
Sbjct: 678 CGQEEPPASACPGGCGPRELCRAGQCVCV-EGFRG 711
>AL645922-1|CAI41718.1| 4222|Homo sapiens tenascin XB protein.
Length = 4222
Score = 31.1 bits (67), Expect = 0.69
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +2
Query: 95 CGRRRPYRGACRAGCSHSRLKRTSKCHCFGEAXRG 199
CG+ P AC GC L R +C C E RG
Sbjct: 678 CGQEEPPASACPGGCGPRELCRAGQCVCV-EGFRG 711
>AL049547-2|CAB89296.1| 4288|Homo sapiens dJ34F7.1.1 (tenascin XB
(isoform 1)) protein.
Length = 4288
Score = 31.1 bits (67), Expect = 0.69
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +2
Query: 95 CGRRRPYRGACRAGCSHSRLKRTSKCHCFGEAXRG 199
CG+ P AC GC L R +C C E RG
Sbjct: 677 CGQEEPPASACPGGCGPRELCRAGQCVCV-EGFRG 710
>BC015202-1|AAH15202.2| 561|Homo sapiens CENPT protein protein.
Length = 561
Score = 30.7 bits (66), Expect = 0.91
Identities = 28/86 (32%), Positives = 40/86 (46%)
Frame = +1
Query: 4 PVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLLR 183
P PQAV S Q +C +L EL + + P PG + K+ L++S+ +
Sbjct: 113 PAPQAVQPS--------RQESSCGSL-ELQLPELEPPTTLAPGLLAPGRRKQRLRLSVFQ 163
Query: 184 GGXAWSMSSSLEPDGKAPDVSFLERT 261
G +S S EP G A D S L R+
Sbjct: 164 QGVDQGLSLSQEPQGNA-DASSLTRS 188
>BC007642-1|AAH07642.1| 558|Homo sapiens CENPT protein protein.
Length = 558
Score = 30.7 bits (66), Expect = 0.91
Identities = 28/86 (32%), Positives = 40/86 (46%)
Frame = +1
Query: 4 PVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLLR 183
P PQAV S Q +C +L EL + + P PG + K+ L++S+ +
Sbjct: 110 PAPQAVQPS--------RQESSCGSL-ELQLPELEPPTTLAPGLLAPGRRKQRLRLSVFQ 160
Query: 184 GGXAWSMSSSLEPDGKAPDVSFLERT 261
G +S S EP G A D S L R+
Sbjct: 161 QGVDQGLSLSQEPQGNA-DASSLTRS 185
>AK055082-1|BAB70851.1| 139|Homo sapiens protein ( Homo sapiens
cDNA FLJ30520 fis, clone BRAWH2000866. ).
Length = 139
Score = 30.7 bits (66), Expect = 0.91
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -2
Query: 173 DTLRFFLNDCASIQPGMPPGMGASCHTESSDSVVHAFACSLAYVCE 36
D+L F C I +P G H ++S +H F CSL+ E
Sbjct: 57 DSLATFTPPCPRITLFLPVGFATHHHLKASSLWIHLFTCSLSVPLE 102
>AK023173-1|BAB14445.1| 299|Homo sapiens protein ( Homo sapiens
cDNA FLJ13111 fis, clone NT2RP3002566. ).
Length = 299
Score = 30.7 bits (66), Expect = 0.91
Identities = 28/86 (32%), Positives = 40/86 (46%)
Frame = +1
Query: 4 PVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLLR 183
P PQAV S Q +C +L EL + + P PG + K+ L++S+ +
Sbjct: 113 PAPQAVQPS--------RQESSCGSL-ELQLPELEPPTTLAPGLLAPGRRKQRLRLSVFQ 163
Query: 184 GGXAWSMSSSLEPDGKAPDVSFLERT 261
G +S S EP G A D S L R+
Sbjct: 164 QGVDQGLSLSQEPQGNA-DASSLTRS 188
>U43148-1|AAC50496.1| 1296|Homo sapiens PTC protein.
Length = 1296
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +2
Query: 8 SHRQLSHPGSRRHMPKN-KQKHALHCQSSPCGR--RRPYRGACRAG 136
+H + HP SR H P N KQ+ L S P GR ++P R R G
Sbjct: 1114 AHSTVVHPESRHHPPSNPKQQPHLDSGSLPPGRQGQQPRRDPPRKG 1159
>AK126091-1|BAC86434.1| 161|Homo sapiens protein ( Homo sapiens
cDNA FLJ44103 fis, clone TESTI4044084. ).
Length = 161
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +2
Query: 5 QSHRQLSHPGSRRHMPKNKQKHALHCQSSPCGRRRPYRGACRAGCSHSRLKRTSKCH 175
Q +Q+S +R + + + CQ SPC P RAGCS +K H
Sbjct: 28 QGKKQMSGARARAQHQAHSSQESTQCQVSPCPAWHP-----RAGCSSHGTDGNAKAH 79
>J03909-1|AAA36105.1| 303|Homo sapiens gamma-interferon-inducible
protein precursor protein.
Length = 303
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = +2
Query: 80 CQSSPCGRRRPYRGACRAG---CSHSRLKRTSKC 172
C S+P G R+ Y G C G +H+R + +C
Sbjct: 176 CSSTPQGCRQNYHGVCNGGPRHAAHARQRPADRC 209
>U59464-1|AAC50550.1| 1447|Homo sapiens PATCHED protein.
Length = 1447
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +2
Query: 8 SHRQLSHPGSRRHMPKN-KQKHALHCQSSPCGR--RRPYRGACRAG 136
+H + HP SR H P N +Q+ L S P GR ++P R R G
Sbjct: 1265 AHSTVVHPESRHHPPSNPRQQPHLDSGSLPPGRQGQQPRRDPPREG 1310
>DQ013130-1|AAY67799.1| 2014|Homo sapiens leucine-rich repeat kinase 1
protein.
Length = 2014
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -2
Query: 299 PPCSAARTPSVPAVRSRNDTSGAFPSGSSDDDMLHAXPPRSND 171
PP AAR+PS + +S F + D DMLH P ++D
Sbjct: 1847 PPRQAARSPSSLPSSPASSSSVPFSTDCEDSDMLHT-PGAASD 1888
>BC146769-1|AAI46770.1| 1369|Homo sapiens LRRK1 protein protein.
Length = 1369
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -2
Query: 299 PPCSAARTPSVPAVRSRNDTSGAFPSGSSDDDMLHAXPPRSND 171
PP AAR+PS + +S F + D DMLH P ++D
Sbjct: 1202 PPRQAARSPSSLPSSPASSSSVPFSTDCEDSDMLHT-PGAASD 1243
>BC066655-1|AAH66655.1| 439|Homo sapiens LRRK1 protein protein.
Length = 439
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -2
Query: 299 PPCSAARTPSVPAVRSRNDTSGAFPSGSSDDDMLHAXPPRSND 171
PP AAR+PS + +S F + D DMLH P ++D
Sbjct: 272 PPRQAARSPSSLPSSPASSSSVPFSTDCEDSDMLHT-PGAASD 313
>AY395772-1|AAR21240.1| 345|Homo sapiens patched protein.
Length = 345
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +2
Query: 8 SHRQLSHPGSRRHMPKN-KQKHALHCQSSPCGR--RRPYRGACRAG 136
+H + HP SR H P N +Q+ L S P GR ++P R R G
Sbjct: 163 AHSTVVHPESRHHPPSNPRQQPHLDSGSLPPGRQGQQPRRDPPREG 208
>AY040829-1|AAK81886.1| 426|Homo sapiens DN p73 gamma protein.
Length = 426
Score = 28.7 bits (61), Expect = 3.7
Identities = 21/63 (33%), Positives = 25/63 (39%)
Frame = -1
Query: 276 SQRSSGTLQERHVRGLPVRLQRRRHAPRXASPKQ*HFEVLFKRLCEHPARHAPRYGRLLP 97
SQR +R V GL V L PR P+Q + +L H H PR LP
Sbjct: 363 SQRRDEQQPQRPVHGLGVPLHSATPLPRRPQPRQFFNRIGVSKL--HRVFHLPRVTEHLP 420
Query: 96 HGE 88
E
Sbjct: 421 PAE 423
>AL161729-2|CAH73818.1| 1296|Homo sapiens patched homolog 1
(Drosophila) protein.
Length = 1296
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +2
Query: 8 SHRQLSHPGSRRHMPKN-KQKHALHCQSSPCGR--RRPYRGACRAG 136
+H + HP SR H P N +Q+ L S P GR ++P R R G
Sbjct: 1114 AHSTVVHPESRHHPPSNPRQQPHLDSGSLPPGRQGQQPRRDPPREG 1159
>AL161729-1|CAH73817.1| 1447|Homo sapiens patched homolog 1
(Drosophila) protein.
Length = 1447
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +2
Query: 8 SHRQLSHPGSRRHMPKN-KQKHALHCQSSPCGR--RRPYRGACRAG 136
+H + HP SR H P N +Q+ L S P GR ++P R R G
Sbjct: 1265 AHSTVVHPESRHHPPSNPRQQPHLDSGSLPPGRQGQQPRRDPPREG 1310
>AL136528-4|CAI19125.1| 426|Homo sapiens tumor protein p73 protein.
Length = 426
Score = 28.7 bits (61), Expect = 3.7
Identities = 21/63 (33%), Positives = 25/63 (39%)
Frame = -1
Query: 276 SQRSSGTLQERHVRGLPVRLQRRRHAPRXASPKQ*HFEVLFKRLCEHPARHAPRYGRLLP 97
SQR +R V GL V L PR P+Q + +L H H PR LP
Sbjct: 363 SQRRDEQQPQRPVHGLGVPLHSATPLPRRPQPRQFFNRIGVSKL--HRVFHLPRVTEHLP 420
Query: 96 HGE 88
E
Sbjct: 421 PAE 423
>AK131075-1|BAC85125.1| 1112|Homo sapiens FLJ00262 protein protein.
Length = 1112
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -2
Query: 299 PPCSAARTPSVPAVRSRNDTSGAFPSGSSDDDMLHAXPPRSND 171
PP AAR+PS + +S F + D DMLH P ++D
Sbjct: 945 PPRQAARSPSSLPSSPASSSSVPFSTDCEDSDMLHT-PGAASD 986
>AK124593-1|BAC85893.1| 242|Homo sapiens protein ( Homo sapiens
cDNA FLJ42602 fis, clone BRACE3011271, moderately
similar to Patched protein. ).
Length = 242
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +2
Query: 8 SHRQLSHPGSRRHMPKN-KQKHALHCQSSPCGR--RRPYRGACRAG 136
+H + HP SR H P N +Q+ L S P GR ++P R R G
Sbjct: 57 AHSTVVHPESRHHPPSNPRQQPHLDSGSLPPGRQGQQPRRDPPREG 102
>AK026772-1|BAB15547.1| 253|Homo sapiens protein ( Homo sapiens
cDNA: FLJ23119 fis, clone LNG07978. ).
Length = 253
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -2
Query: 299 PPCSAARTPSVPAVRSRNDTSGAFPSGSSDDDMLHAXPPRSND 171
PP AAR+PS + +S F + D DMLH P ++D
Sbjct: 86 PPRQAARSPSSLPSSPASSSSVPFSTDCEDSDMLHT-PGAASD 127
>AB058693-1|BAB47419.1| 1369|Homo sapiens KIAA1790 protein protein.
Length = 1369
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -2
Query: 299 PPCSAARTPSVPAVRSRNDTSGAFPSGSSDDDMLHAXPPRSND 171
PP AAR+PS + +S F + D DMLH P ++D
Sbjct: 1202 PPRQAARSPSSLPSSPASSSSVPFSTDCEDSDMLHT-PGAASD 1243
>BC005408-1|AAH05408.2| 659|Homo sapiens LRRK1 protein protein.
Length = 659
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 299 PPCSAARTPSVPAVRSRNDTSGAFPSGSSDDDMLH 195
PP AAR+PS + +S F + D DMLH
Sbjct: 524 PPRQAARSPSSLPSSPASSSSVPFSTDCEDSDMLH 558
>AL358472-2|CAI14016.1| 1384|Homo sapiens DENN/MADD domain
containing 4B protein.
Length = 1384
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 76 TLSELSVWQEAPIPGGMPG 132
+LS+LS+ E P+PGG PG
Sbjct: 889 SLSDLSLTGEEPLPGGSPG 907
>AB007945-1|BAA32321.3| 1626|Homo sapiens KIAA0476 protein protein.
Length = 1626
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 76 TLSELSVWQEAPIPGGMPG 132
+LS+LS+ E P+PGG PG
Sbjct: 1131 SLSDLSLTGEEPLPGGSPG 1149
>AC093582-1|AAQ96869.1| 129|Homo sapiens unknown protein.
Length = 129
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 135 PARHAPRYGRLLPHGEL*QCSAC 67
PA H P Y +L+PH L + S+C
Sbjct: 21 PATHWPLYAQLMPHSGLSRPSSC 43
>BC036335-1|AAH36335.1| 1151|Homo sapiens BTBD12 protein protein.
Length = 1151
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 179 SNDTLRFFLNDCASIQPGMPPGMGASCHTESSDSVVHAFACS-LAYVCETQDVTT 18
S + R FL+ + G+PPG+ + S+ H F S L ++CE + T
Sbjct: 61 STEAARTFLHYLYTADTGLPPGLSSEL-----SSLAHRFGVSELVHLCEQVPIAT 110
>AF395237-1|AAL35186.1| 80|Homo sapiens dopamine receptor D4
protein.
Length = 80
Score = 27.5 bits (58), Expect = 8.5
Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Frame = -2
Query: 302 CPPCSAARTPSVPAVRSRNDTSGAFPSGSSDDDMLHAXPPRSNDTLRFFLNDCASIQPGM 123
C P A P +P D + A PS D PP DCA PG+
Sbjct: 10 CGPDCAPPAPGLPRGPCGPDCAPAAPSLPQDPCGPDCAPPAPGLPPDPCGPDCAPPAPGL 69
Query: 122 PPG-MGASC 99
PP G++C
Sbjct: 70 PPDPCGSNC 78
>AB058687-1|BAB47413.1| 1167|Homo sapiens KIAA1784 protein protein.
Length = 1167
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 179 SNDTLRFFLNDCASIQPGMPPGMGASCHTESSDSVVHAFACS-LAYVCETQDVTT 18
S + R FL+ + G+PPG+ + S+ H F S L ++CE + T
Sbjct: 77 STEAARTFLHYLYTADTGLPPGLSSEL-----SSLAHRFGVSELVHLCEQVPIAT 126
>AB058677-1|BAB47410.1| 969|Homo sapiens MEGF11 protein (KIAA1781)
protein.
Length = 969
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/32 (34%), Positives = 12/32 (37%)
Frame = +2
Query: 83 QSSPCGRRRPYRGACRAGCSHSRLKRTSKCHC 178
Q+S G P C C H R CHC
Sbjct: 14 QTSSTGSSAPGTALCTEECVHGRCVSPDTCHC 45
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.313 0.127 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,634,723
Number of Sequences: 237096
Number of extensions: 1242577
Number of successful extensions: 3367
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 3139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3367
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1400773776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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