Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30130X
         (309 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   1.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   1.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   1.5  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          20   5.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    20   7.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   7.8  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            20   7.8  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 100 QEAPIPGGMPGWMLAQSFKKN 162
           +E P PG +PG  + QSF KN
Sbjct: 23  KEEPGPG-LPGQEVKQSFLKN 42



 Score = 19.8 bits (39), Expect = 7.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 231 LPVRLQRRRHAPRXASPKQ 175
           +P+  Q  RH  R A+P Q
Sbjct: 237 IPLYQQPERHYERRATPPQ 255


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 100 QEAPIPGGMPGWMLAQSFKKN 162
           +E P PG +PG  + QSF KN
Sbjct: 23  KEEPGPG-LPGQEVKQSFLKN 42


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 100 QEAPIPGGMPGWMLAQSFKKN 162
           +E P PG +PG  + QSF KN
Sbjct: 23  KEEPGPG-LPGQEVKQSFLKN 42


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 6/8 (75%), Positives = 7/8 (87%), Gaps = 1/8 (12%)
 Frame = +3

Query: 282 CCTT-WWA 302
           CCTT WW+
Sbjct: 200 CCTTXWWS 207


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 241 VSFLERTAGTLGV 279
           + FL  TAGT+G+
Sbjct: 485 IFFLVTTAGTIGI 497


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 145  VRASSPACPPVWAPPATRRALTV 77
            +RAS+PA   + A  A+RR L V
Sbjct: 1108 LRASTPAPVVLEAVHASRRVLIV 1130


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 154 KKNLKVSLLRGGXAWSMSSSLE 219
           KKNLKV L  G     +S +LE
Sbjct: 433 KKNLKVCLPPGQYCDVISGNLE 454


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.127    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,152
Number of Sequences: 438
Number of extensions: 1797
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.1 bits)