Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30130X
(309 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g24100.1 68418.m02830 leucine-rich repeat transmembrane prote... 29 0.84
At4g17020.2 68417.m02567 transcription factor-related contains w... 28 1.1
At4g17020.1 68417.m02568 transcription factor-related contains w... 28 1.1
At2g34410.1 68415.m04217 O-acetyltransferase family protein simi... 28 1.5
At2g25920.1 68415.m03110 expressed protein 27 1.9
At1g31175.1 68414.m03816 expressed protein 27 1.9
At5g46340.1 68418.m05704 O-acetyltransferase-related similar to ... 27 2.6
At5g11810.1 68418.m01378 expressed protein 27 2.6
At3g26610.1 68416.m03322 polygalacturonase, putative / pectinase... 27 2.6
At3g18810.1 68416.m02389 protein kinase family protein contains ... 27 2.6
At4g13350.2 68417.m02088 human Rev interacting-like protein-rela... 27 3.4
At4g13350.1 68417.m02087 human Rev interacting-like protein-rela... 27 3.4
At3g12500.1 68416.m01556 basic endochitinase identical to basic ... 27 3.4
At3g05090.2 68416.m00553 transducin family protein / WD-40 repea... 27 3.4
At3g05090.1 68416.m00552 transducin family protein / WD-40 repea... 27 3.4
At3g23670.1 68416.m02976 phragmoplast-associated kinesin-related... 26 4.5
At3g16500.1 68416.m02106 auxin-responsive AUX/IAA family protein... 26 4.5
At2g04620.1 68415.m00470 cation efflux family protein potential ... 26 4.5
At3g61910.1 68416.m06953 no apical meristem (NAM) family protein... 26 5.9
At4g38560.1 68417.m05459 expressed protein 25 7.8
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 25 7.8
At1g68410.1 68414.m07815 protein phosphatase 2C-related / PP2C-r... 25 7.8
>At5g24100.1 68418.m02830 leucine-rich repeat transmembrane protein
kinase, putative
Length = 614
Score = 28.7 bits (61), Expect = 0.84
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 249 PGAYRWNAGSPCCTTW 296
P + WN SP CTTW
Sbjct: 47 PRSLAWNTSSPVCTTW 62
>At4g17020.2 68417.m02567 transcription factor-related contains weak
similarity to Swiss-Prot:Q92759 TFIIH basal
transcription factor complex p52 subunit (Basic
transcription factor 52 kDa subunit, BTF2-p52, General
transcription factor IIH polypeptide 4) [Homo sapiens]
Length = 462
Score = 28.3 bits (60), Expect = 1.1
Identities = 20/87 (22%), Positives = 35/87 (40%)
Frame = +1
Query: 4 PVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLLR 183
PVP ++ WV + A L +L ++ E + L +F+ NL+ ++
Sbjct: 57 PVPATMMEEWVLADGTSKHRVAIDRLIQLRIFSEISDRKRGTSYSLNPTFQNNLQKHIIS 116
Query: 184 GGXAWSMSSSLEPDGKAPDVSFLERTA 264
GG + + K P + LE A
Sbjct: 117 GGVLPREPMNSDNAIKLPSLQELETYA 143
>At4g17020.1 68417.m02568 transcription factor-related contains weak
similarity to Swiss-Prot:Q92759 TFIIH basal
transcription factor complex p52 subunit (Basic
transcription factor 52 kDa subunit, BTF2-p52, General
transcription factor IIH polypeptide 4) [Homo sapiens]
Length = 452
Score = 28.3 bits (60), Expect = 1.1
Identities = 20/87 (22%), Positives = 35/87 (40%)
Frame = +1
Query: 4 PVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLLR 183
PVP ++ WV + A L +L ++ E + L +F+ NL+ ++
Sbjct: 57 PVPATMMEEWVLADGTSKHRVAIDRLIQLRIFSEISDRKRGTSYSLNPTFQNNLQKHIIS 116
Query: 184 GGXAWSMSSSLEPDGKAPDVSFLERTA 264
GG + + K P + LE A
Sbjct: 117 GGVLPREPMNSDNAIKLPSLQELETYA 143
>At2g34410.1 68415.m04217 O-acetyltransferase family protein similar
to O-acetyltransferase (GI:17016934) [Homo sapiens];
contains 11 transmembrane domains
Length = 540
Score = 27.9 bits (59), Expect = 1.5
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +1
Query: 73 TTLSELSVWQEAPIPGGMPGWML 141
T +S+ +W + +P G P W+L
Sbjct: 447 TYISQFHIWLRSNVPNGQPKWLL 469
>At2g25920.1 68415.m03110 expressed protein
Length = 280
Score = 27.5 bits (58), Expect = 1.9
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = -2
Query: 302 CPPC--SAARTPSVPAVRSR-NDTSGAFPSGSSDDDMLHAXPPRSNDTLR 162
CP S A T + P R R +DT G FP SS D+ H+ R LR
Sbjct: 168 CPASMISNAATTTTPQSRQRGSDTEGRFP--SSPSDICHSGDLRRTALLR 215
>At1g31175.1 68414.m03816 expressed protein
Length = 118
Score = 27.5 bits (58), Expect = 1.9
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +2
Query: 2 SQSHRQLS--HPGSRRHMPKNKQKHALHCQSSPCGRRRPYRGACRAGCSH 145
S+ HR++ H G R +P K L C RR P A R+GC H
Sbjct: 12 SELHREMRRIHTGKIREIPM-KSCDRLEEALLQCHRRMPEGPARRSGCRH 60
>At5g46340.1 68418.m05704 O-acetyltransferase-related similar to
O-acetyltransferase [Homo sapiens] GI:17016934
Length = 540
Score = 27.1 bits (57), Expect = 2.6
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +1
Query: 73 TTLSELSVWQEAPIPGGMPGWMLA 144
T +S+ +W + +P G P W+L+
Sbjct: 447 TYISQFHIWLRSNMPDGQPKWLLS 470
>At5g11810.1 68418.m01378 expressed protein
Length = 306
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 175 LLRGGXAWSMSSSLEPDGKAPDVSFLERTAGTLGVRAAL 291
LL A+S++S L+P G D+S L +G++AAL
Sbjct: 60 LLDASEAYSIASGLKPKGNGNDISTLAER--FMGLKAAL 96
>At3g26610.1 68416.m03322 polygalacturonase, putative / pectinase,
putative similar to polygalacturonase (PG1) GI:5669846,
(PG2) GI:5669848 [Glycine max]; contains PF00295:
Glycosyl hydrolases family 28 (polygalacturonases)
Length = 470
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 20 LSHPGSRRHMPKNKQKHALHCQSSPCGRRRP 112
+S G + H+ K K KH H +++P G P
Sbjct: 26 VSVEGRKHHVKKIKPKHRRHSKNTPTGSPAP 56
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -2
Query: 299 PPCSAARTPSVPAVRSRNDTSGAFPSGSSDDDMLHAXPPRSND 171
PP S + +PS PA +D+S P S D P +N+
Sbjct: 30 PPPSDSSSPSPPAPPPPDDSSNGSPQPPSSDSQSPPSPQGNNN 72
>At4g13350.2 68417.m02088 human Rev interacting-like protein-related
/ hRIP protein-related similar to SP|P52594
Nucleoporin-like protein RIP (HIV-1 Rev-binding protein)
(Rev interacting protein) (Rev/Rex activation
domain-binding protein) {Homo sapiens}; contains Pfam
profile PF01412: Putative GTPase activating protein for
Arf
Length = 602
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = -2
Query: 296 PCSAARTPSVPAVRSRNDTSGAFPSGSSDDDMLHAXPPRSNDTLRFFLNDCA 141
P S P+ S ND +F + S + + PP S +TL L+ A
Sbjct: 303 PLSTTSQPAPQPTTSSNDNWASFDAAPSAPSLNVSQPPPSGNTLDSLLSQLA 354
>At4g13350.1 68417.m02087 human Rev interacting-like protein-related
/ hRIP protein-related similar to SP|P52594
Nucleoporin-like protein RIP (HIV-1 Rev-binding protein)
(Rev interacting protein) (Rev/Rex activation
domain-binding protein) {Homo sapiens}; contains Pfam
profile PF01412: Putative GTPase activating protein for
Arf
Length = 602
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = -2
Query: 296 PCSAARTPSVPAVRSRNDTSGAFPSGSSDDDMLHAXPPRSNDTLRFFLNDCA 141
P S P+ S ND +F + S + + PP S +TL L+ A
Sbjct: 303 PLSTTSQPAPQPTTSSNDNWASFDAAPSAPSLNVSQPPPSGNTLDSLLSQLA 354
>At3g12500.1 68416.m01556 basic endochitinase identical to basic
endochitinase precursor SP:P19171 from [Arabidopsis
thaliana]
Length = 322
Score = 26.6 bits (56), Expect = 3.4
Identities = 24/83 (28%), Positives = 29/83 (34%), Gaps = 4/83 (4%)
Frame = -2
Query: 299 PPCSAARTPSVPAVRSRNDTSGAFPSGSSDDDMLH----AXPPRSNDTLRFFLNDCASIQ 132
P C + TP D SG S DD + H A P R T F+ S
Sbjct: 54 PGCQSQCTPGGTPPGPTGDLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSF- 112
Query: 131 PGMPPGMGASCHTESSDSVVHAF 63
PG G + T + V AF
Sbjct: 113 ----PGFGTTGDTATRKKEVAAF 131
>At3g05090.2 68416.m00553 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 230 FPSGSSDDDMLHAXPPRSNDTLRFFLNDC 144
FP D + + PPR N L FFL+ C
Sbjct: 609 FPLWCLDAVLNNRLPPRENTKLSFFLHPC 637
>At3g05090.1 68416.m00552 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 230 FPSGSSDDDMLHAXPPRSNDTLRFFLNDC 144
FP D + + PPR N L FFL+ C
Sbjct: 609 FPLWCLDAVLNNRLPPRENTKLSFFLHPC 637
>At3g23670.1 68416.m02976 phragmoplast-associated kinesin-related
protein, putative similar to kinesin like protein
GB:CAB10194 from [Arabidopsis thaliana]
Length = 1313
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 168 FEVLFKRLCEHPARHAPR 115
FE+LF RL E A+HA R
Sbjct: 204 FELLFARLSEEQAKHAER 221
>At3g16500.1 68416.m02106 auxin-responsive AUX/IAA family protein
similar to SP|O24408|AXII_ARATH Auxin-responsive protein
IAA18 (Indoleacetic acid-induced protein 18)
{Arabidopsis thaliana}; contains Pfam profile: PF02309:
AUX/IAA family
Length = 269
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 76 TLSELSVWQEAPIPGGMPGWMLAQSFKKNL 165
T S + Q+ PG + GW +SF+KNL
Sbjct: 88 TTSVPHISQKRTAPGPVVGWPPVRSFRKNL 117
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/49 (28%), Positives = 18/49 (36%)
Frame = +2
Query: 2 SQSHRQLSHPGSRRHMPKNKQKHALHCQSSPCGRRRPYRGACRAGCSHS 148
S SH+ SH H + KH H Q S + + SHS
Sbjct: 557 SHSHQSHSHKNEEHHQHSDSHKHEEHHQHSDSHKHEEHHEHDHHHHSHS 605
>At3g61910.1 68416.m06953 no apical meristem (NAM) family protein no
apical meristem (NAM) - Petunia hybrida, EMBL:PHDNANAM
Length = 334
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +1
Query: 10 PQAVVTSWVSQTYAKEQAKACTTLSELSVWQEA-PIPGGMPGWMLAQSFKKN 162
P + W+ Y +++ ++ + V E + G GW++ + FKKN
Sbjct: 125 PHGQKSDWIMHEYRLDESVLISSCGDHDVNVETCDVIGSDEGWVVCRVFKKN 176
>At4g38560.1 68417.m05459 expressed protein
Length = 521
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = -2
Query: 281 RTPSVPAVRSRNDTSGAFPSGSSDDDMLHAXPPRSNDTL 165
R+P R D S PS SS DD +A P TL
Sbjct: 64 RSPLPSYYGKRMDESDESPSFSSSDDSFNANLPTPRSTL 102
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = -1
Query: 153 KRLCEHPARHAPR-YGRLLPHGE 88
KRLC+H AR R +G ++ HG+
Sbjct: 690 KRLCDHLARSVGRHFGAVVIHGD 712
>At1g68410.1 68414.m07815 protein phosphatase 2C-related /
PP2C-related similar to protein phosphatase-2C
GB:AAC36697 from [Mesembryanthemum crystallinum]
Length = 436
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 248 NDTSGAFPSGSSDDDMLHAXP 186
N A PSG S D+ LHA P
Sbjct: 95 NHVISALPSGLSRDEWLHALP 115
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.313 0.127 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,744,405
Number of Sequences: 28952
Number of extensions: 151681
Number of successful extensions: 377
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 321405440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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