Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30129
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...   133   3e-32
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    27   2.8  
SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom...    27   3.7  
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual           26   4.9  
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||...    26   6.5  
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe...    26   6.5  

>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score =  133 bits (321), Expect = 3e-32
 Identities = 63/79 (79%), Positives = 67/79 (84%)
 Frame = +1

Query: 256 DRYELENGNHIIVLAAGRLVNLGCATGHSSFVMSNSFTNQVLAQIELWTKADTYPIGVHT 435
           DRYEL+NG HII+LA GRLVNLGCATGH SFVMS SFTNQVLAQI LWT   +YP+GVH 
Sbjct: 327 DRYELKNGRHIILLADGRLVNLGCATGHPSFVMSCSFTNQVLAQIALWTDNTSYPLGVHM 386

Query: 436 LPKKLDEEVAALHLDHLGV 492
           LPKKLDEEVA LHL  LGV
Sbjct: 387 LPKKLDEEVARLHLGKLGV 405



 Score =  128 bits (308), Expect = 1e-30
 Identities = 64/86 (74%), Positives = 70/86 (81%), Gaps = 1/86 (1%)
 Frame = +2

Query: 2   IVTEIDPINALQAAMEGFQVTTMEEAAEVGQIFVTTTGNIDIICKEHLLRMKDDAIVCNI 181
           IVTE+DPINALQAAM+GF+VTTMEEA + GQIFVTTTG  DII  EH   MK+D+IVCNI
Sbjct: 241 IVTEVDPINALQAAMDGFEVTTMEEAVKEGQIFVTTTGCRDIIRGEHFNEMKEDSIVCNI 300

Query: 182 GHFDCEIDVAWLDNNAKK-VNIKQHV 256
           GHFD EIDVAWL  NAK  VNIK  V
Sbjct: 301 GHFDVEIDVAWLKANAKDVVNIKPQV 326



 Score = 35.9 bits (79), Expect = 0.006
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 468 LAFGSPWCKTDEVKPKQAKYIGVSREGPYKPDHYRY 575
           L  G    K   +   Q+ Y+G+  +GPYK DHYRY
Sbjct: 398 LHLGKLGVKLTTLTSVQSDYLGIPVDGPYKADHYRY 433


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 17/49 (34%), Positives = 20/49 (40%)
 Frame = -1

Query: 228 ALLSSHATSISQSK*PMLHTIASSFILRRCSLHIMSIFPVVVTKI*PTS 82
           A L    + I   K   LH I   F LRR    ++  FP  V  I P S
Sbjct: 743 AELEKRYSIIDTEKVTELHQILKPFFLRRVKSEVLDNFPTKVEVIIPLS 791


>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 7/28 (25%), Positives = 18/28 (64%)
 Frame = -2

Query: 590 ISSKLISVMIWLVRSFSRDTNVFGLFRF 507
           +  KL+ +++W  R+  R+T + G+ ++
Sbjct: 78  VGQKLVELVVWRERNPKRETRILGILQY 105


>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 365 NELDITKEEWPVAQPKLTSLPA 300
           NE ++TK + P+ +PKL   P+
Sbjct: 281 NERELTKHKLPIVKPKLAVFPS 302


>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = +3

Query: 18  IPSTHFRPQWKVFK*L---LWRKPLKWVKSLS-PRREILTLYAKNI 143
           + S   RPQWK F+ L   L R P KW   L+ P  ++   Y  N+
Sbjct: 136 LKSAFLRPQWKGFERLKAALGRLPGKWSFYLTFPTEKVDQSYQNNL 181


>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 605 LNVKEEKKSYLIKNNLIQFILKKCNCI 685
           L  KEE +S+L+K  L  FI+ + + I
Sbjct: 236 LTTKEEARSFLLKQQLTAFIILESSII 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,060,382
Number of Sequences: 5004
Number of extensions: 62610
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)