Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30129
         (741 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888    100   1e-21
08_02_0918 - 22617388-22617693,22617799-22617848,22618538-226188...    28   6.8  

>11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888
          Length = 433

 Score =  100 bits (240), Expect = 1e-21
 Identities = 50/84 (59%), Positives = 61/84 (72%), Gaps = 2/84 (2%)
 Frame = +2

Query: 2   IVTEIDPINALQAAMEGFQVTTMEEAAEVGQIFVTTTGNIDIICKEHLLRMKDDAIVCNI 181
           IVTEIDPI ALQA MEG QV T+E+      IFVTTTGN DII  +H+ +MK++AIVCNI
Sbjct: 255 IVTEIDPICALQALMEGLQVLTLEDVVSEADIFVTTTGNKDIIMVDHMRKMKNNAIVCNI 314

Query: 182 GHFDCEIDVAWLDN--NAKKVNIK 247
           GHFD EID+  L+     K++ IK
Sbjct: 315 GHFDNEIDMLGLETYPGVKRITIK 338



 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 49/75 (65%), Positives = 55/75 (73%), Gaps = 2/75 (2%)
 Frame = +1

Query: 271 ENGNHIIVLAAGRLVNLGCATGHSSFVMSNSFTNQVLAQIELWTKADT--YPIGVHTLPK 444
           E    IIVLA GRL+NLGCATGH SFVMS SFTNQV+AQ+ELW +  T  Y   V+ LPK
Sbjct: 348 ETNTGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPK 407

Query: 445 KLDEEVAALHLDHLG 489
            LDE+VA LHL  LG
Sbjct: 408 HLDEKVACLHLGKLG 422


>08_02_0918 -
           22617388-22617693,22617799-22617848,22618538-22618817,
           22619654-22620340,22622870-22622944,22623150-22623285,
           22624801-22625093,22625776-22626597
          Length = 882

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 98  FVTTTGNIDIICKEHLLRMKDDAIVCNIGHF 190
           F+      D+  K H++RMK  A +CN  HF
Sbjct: 289 FLNAQSTNDMFAKLHVVRMKKVACLCNEMHF 319


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,784,181
Number of Sequences: 37544
Number of extensions: 367509
Number of successful extensions: 735
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)