Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30129
         (741 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19018| Best HMM Match : No HMM Matches (HMM E-Value=.)             138   3e-33
SB_4195| Best HMM Match : No HMM Matches (HMM E-Value=.)               41   0.001
SB_23042| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_21953| Best HMM Match : UME (HMM E-Value=6.1)                       29   4.0  

>SB_19018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score =  138 bits (335), Expect = 3e-33
 Identities = 64/88 (72%), Positives = 73/88 (82%)
 Frame = +1

Query: 229 KKS*HQTTCDRYELENGNHIIVLAAGRLVNLGCATGHSSFVMSNSFTNQVLAQIELWTKA 408
           KKS  +   DRYEL NG H+++LA GRLVNLGCA GH SFVMSNSFTNQVLAQIELWT+ 
Sbjct: 319 KKSTIKPQVDRYELPNGRHVVLLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTRH 378

Query: 409 DTYPIGVHTLPKKLDEEVAALHLDHLGV 492
           + YP+ V+ LPK LDE+VAALHLDHLGV
Sbjct: 379 EKYPLNVYMLPKTLDEKVAALHLDHLGV 406



 Score =  130 bits (315), Expect = 9e-31
 Identities = 60/85 (70%), Positives = 67/85 (78%)
 Frame = +2

Query: 2   IVTEIDPINALQAAMEGFQVTTMEEAAEVGQIFVTTTGNIDIICKEHLLRMKDDAIVCNI 181
           ++TEIDPINALQAA EGF+VTTM+EAA    IFVT TG   II KEH + MKDDAIVCN+
Sbjct: 243 LITEIDPINALQAACEGFEVTTMDEAASQANIFVTATGCSGIITKEHFMMMKDDAIVCNV 302

Query: 182 GHFDCEIDVAWLDNNAKKVNIKQHV 256
           GHFDCEIDVAWL+ N KK  IK  V
Sbjct: 303 GHFDCEIDVAWLNENCKKSTIKPQV 327



 Score = 37.5 bits (83), Expect = 0.011
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +3

Query: 492 KTDEVKPKQAKYIGVSREGPYKPDHYRY 575
           K  ++   QA Y+G+  EGP+KP++YRY
Sbjct: 407 KLTKLTNTQASYLGIKTEGPFKPEYYRY 434


>SB_4195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 14/25 (56%), Positives = 21/25 (84%)
 Frame = +3

Query: 501 EVKPKQAKYIGVSREGPYKPDHYRY 575
           ++   QAKY+GV++ GPYKP++YRY
Sbjct: 320 DLSDDQAKYLGVNKNGPYKPNYYRY 344



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 18/36 (50%), Positives = 24/36 (66%)
 Frame = +2

Query: 5   VTEIDPINALQAAMEGFQVTTMEEAAEVGQIFVTTT 112
           +TEIDPI  LQA M+GF+V  +EE  +   I +T T
Sbjct: 267 ITEIDPICGLQACMDGFRVVKIEEVCKHIDILITCT 302


>SB_23042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -3

Query: 154 HSKKMFFAYNVNISRRGDKDLTHFSGFLHSSHLKTFHCGLKCVDGID 14
           HS + F  Y+ N+ ++GD+ L   +  +   H++    GL  V+G D
Sbjct: 19  HSDRAFEFYSQNMHKKGDEVLLIHANDIAERHIQLHPYGLATVEGWD 65


>SB_21953| Best HMM Match : UME (HMM E-Value=6.1)
          Length = 304

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/53 (33%), Positives = 30/53 (56%)
 Frame = -3

Query: 211 CNINFAIKVTNVAHNCIVLHSKKMFFAYNVNISRRGDKDLTHFSGFLHSSHLK 53
           CN+N  +K++  A+N I    K+   A N+N++R    DL+  S  +H  +LK
Sbjct: 259 CNVNETLKLSKTAYNWI----KE---ADNINVNRMSGNDLSS-SSLIHLQNLK 303


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,340,245
Number of Sequences: 59808
Number of extensions: 453059
Number of successful extensions: 854
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)