Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30129
(741 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
S57284-1|AAB25906.1| 437|Caenorhabditis elegans S-adenosylhomoc... 125 3e-29
M64306-1|AAA28062.1| 437|Caenorhabditis elegans S-adenosylhomoc... 125 3e-29
AF043699-5|AAB97565.1| 437|Caenorhabditis elegans Hypothetical ... 125 3e-29
AF039049-4|AAB94250.2| 293|Caenorhabditis elegans Serpentine re... 29 4.6
Z83236-9|CAN86907.1| 140|Caenorhabditis elegans Hypothetical pr... 28 6.0
>S57284-1|AAB25906.1| 437|Caenorhabditis elegans
S-adenosylhomocysteine hydrolase protein.
Length = 437
Score = 125 bits (302), Expect = 3e-29
Identities = 62/91 (68%), Positives = 70/91 (76%), Gaps = 3/91 (3%)
Frame = +1
Query: 229 KKS*HQTTCDRYELENGNHIIVLAAGRLVNLGCATGHSSFVMSNSFTNQVLAQIELWTKA 408
KK + DRY L+NG H+I+LA GRLVNLGCATGH SFVMSNSFTNQVLAQ+ELWTK
Sbjct: 319 KKDTIKPQVDRYTLKNGRHVILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQVELWTKF 378
Query: 409 DT---YPIGVHTLPKKLDEEVAALHLDHLGV 492
T Y +G++ LPK LDEEVA LHL LGV
Sbjct: 379 GTPQEYKLGLYVLPKTLDEEVAYLHLAQLGV 409
Score = 116 bits (280), Expect = 1e-26
Identities = 57/86 (66%), Positives = 66/86 (76%), Gaps = 1/86 (1%)
Frame = +2
Query: 2 IVTEIDPINALQAAMEGFQVTTMEEAAEVGQIFVTTTGNIDIICKEHLLRMKDDAIVCNI 181
IVTEIDPINALQAAMEG++VTT+EEAA I VTTTG DI+ +H + +DAIVCN+
Sbjct: 242 IVTEIDPINALQAAMEGYEVTTLEEAAPKANIIVTTTGCKDIVTGKHFELLPNDAIVCNV 301
Query: 182 GHFDCEIDVAWLDNNA-KKVNIKQHV 256
GHFDCEIDV WL+ NA KK IK V
Sbjct: 302 GHFDCEIDVKWLNTNATKKDTIKPQV 327
Score = 41.5 bits (93), Expect = 6e-04
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +3
Query: 492 KTDEVKPKQAKYIGVSREGPYKPDHYRY 575
K ++ +QA Y+GV GPYKPDHYRY
Sbjct: 410 KLTKLSDEQASYLGVPVAGPYKPDHYRY 437
>M64306-1|AAA28062.1| 437|Caenorhabditis elegans
S-adenosylhomocysteine hydrolase protein.
Length = 437
Score = 125 bits (302), Expect = 3e-29
Identities = 62/91 (68%), Positives = 70/91 (76%), Gaps = 3/91 (3%)
Frame = +1
Query: 229 KKS*HQTTCDRYELENGNHIIVLAAGRLVNLGCATGHSSFVMSNSFTNQVLAQIELWTKA 408
KK + DRY L+NG H+I+LA GRLVNLGCATGH SFVMSNSFTNQVLAQ+ELWTK
Sbjct: 319 KKDTIKPQVDRYTLKNGRHVILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQVELWTKF 378
Query: 409 DT---YPIGVHTLPKKLDEEVAALHLDHLGV 492
T Y +G++ LPK LDEEVA LHL LGV
Sbjct: 379 GTPQEYKLGLYVLPKTLDEEVAYLHLAQLGV 409
Score = 116 bits (280), Expect = 1e-26
Identities = 57/86 (66%), Positives = 66/86 (76%), Gaps = 1/86 (1%)
Frame = +2
Query: 2 IVTEIDPINALQAAMEGFQVTTMEEAAEVGQIFVTTTGNIDIICKEHLLRMKDDAIVCNI 181
IVTEIDPINALQAAMEG++VTT+EEAA I VTTTG DI+ +H + +DAIVCN+
Sbjct: 242 IVTEIDPINALQAAMEGYEVTTLEEAAPKANIIVTTTGCKDIVTGKHFELLPNDAIVCNV 301
Query: 182 GHFDCEIDVAWLDNNA-KKVNIKQHV 256
GHFDCEIDV WL+ NA KK IK V
Sbjct: 302 GHFDCEIDVKWLNTNATKKDTIKPQV 327
Score = 41.5 bits (93), Expect = 6e-04
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +3
Query: 492 KTDEVKPKQAKYIGVSREGPYKPDHYRY 575
K ++ +QA Y+GV GPYKPDHYRY
Sbjct: 410 KLTKLSDEQASYLGVPVAGPYKPDHYRY 437
>AF043699-5|AAB97565.1| 437|Caenorhabditis elegans Hypothetical
protein K02F2.2 protein.
Length = 437
Score = 125 bits (302), Expect = 3e-29
Identities = 62/91 (68%), Positives = 70/91 (76%), Gaps = 3/91 (3%)
Frame = +1
Query: 229 KKS*HQTTCDRYELENGNHIIVLAAGRLVNLGCATGHSSFVMSNSFTNQVLAQIELWTKA 408
KK + DRY L+NG H+I+LA GRLVNLGCATGH SFVMSNSFTNQVLAQ+ELWTK
Sbjct: 319 KKDTIKPQVDRYTLKNGRHVILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQVELWTKF 378
Query: 409 DT---YPIGVHTLPKKLDEEVAALHLDHLGV 492
T Y +G++ LPK LDEEVA LHL LGV
Sbjct: 379 GTPQEYKLGLYVLPKTLDEEVAYLHLAQLGV 409
Score = 116 bits (280), Expect = 1e-26
Identities = 57/86 (66%), Positives = 66/86 (76%), Gaps = 1/86 (1%)
Frame = +2
Query: 2 IVTEIDPINALQAAMEGFQVTTMEEAAEVGQIFVTTTGNIDIICKEHLLRMKDDAIVCNI 181
IVTEIDPINALQAAMEG++VTT+EEAA I VTTTG DI+ +H + +DAIVCN+
Sbjct: 242 IVTEIDPINALQAAMEGYEVTTLEEAAPKANIIVTTTGCKDIVTGKHFELLPNDAIVCNV 301
Query: 182 GHFDCEIDVAWLDNNA-KKVNIKQHV 256
GHFDCEIDV WL+ NA KK IK V
Sbjct: 302 GHFDCEIDVKWLNTNATKKDTIKPQV 327
Score = 41.5 bits (93), Expect = 6e-04
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +3
Query: 492 KTDEVKPKQAKYIGVSREGPYKPDHYRY 575
K ++ +QA Y+GV GPYKPDHYRY
Sbjct: 410 KLTKLSDEQASYLGVPVAGPYKPDHYRY 437
>AF039049-4|AAB94250.2| 293|Caenorhabditis elegans Serpentine
receptor, class x protein65 protein.
Length = 293
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +2
Query: 572 ILTCC*SMYVLLNVKEEKKSYLIKNNLIQFILKKCNCIER 691
I+T S+ +L +K + KSY IKN L ++K +C +R
Sbjct: 177 IVTFMMSVDILNLIKVKVKSYQIKNTLTNAAIEKLSCRDR 216
>Z83236-9|CAN86907.1| 140|Caenorhabditis elegans Hypothetical
protein K10H10.12 protein.
Length = 140
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 342 GMAGCAT*INQSSCSKNNNMVTIF-*FITITCCLMLTFFAL 223
G++GC T N+ C++ +N IF F+T+ M T F L
Sbjct: 100 GVSGCHTCNNKHMCNRFSNFSIIFVIFLTLFSAFMFTGFIL 140
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,986,799
Number of Sequences: 27780
Number of extensions: 354995
Number of successful extensions: 721
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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