Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30129
         (741 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13940.1 68417.m02157 adenosylhomocysteinase / S-adenosyl-L-h...   100   9e-22
At3g23810.1 68416.m02993 adenosylhomocysteinase, putative / S-ad...    99   4e-21
At2g27230.1 68415.m03272 transcription factor-related contains w...    28   5.7  
At5g49890.1 68418.m06178 chloride channel protein (CLC-c) identi...    28   7.5  
At1g15740.1 68414.m01888 leucine-rich repeat family protein            28   7.5  

>At4g13940.1 68417.m02157 adenosylhomocysteinase /
           S-adenosyl-L-homocysteine hydrolase / AdoHcyase (SAHH)
           identical to SP|O23255 Adenosylhomocysteinase (EC
           3.3.1.1) (S-adenosyl-L-homocysteine hydrolase)
           (AdoHcyase) {Arabidopsis thaliana}; strong similarity to
           SP|P50248 Adenosylhomocysteinase (EC 3.3.1.1) {Nicotiana
           sylvestris}
          Length = 485

 Score =  100 bits (240), Expect = 9e-22
 Identities = 50/84 (59%), Positives = 61/84 (72%), Gaps = 2/84 (2%)
 Frame = +2

Query: 2   IVTEIDPINALQAAMEGFQVTTMEEAAEVGQIFVTTTGNIDIICKEHLLRMKDDAIVCNI 181
           IVTEIDPI ALQA MEG QV T+E+      IFVTTTGN DII  +H+ +MK++AIVCNI
Sbjct: 289 IVTEIDPICALQALMEGLQVLTLEDVVSEADIFVTTTGNKDIIMVDHMRKMKNNAIVCNI 348

Query: 182 GHFDCEIDVAWLDN--NAKKVNIK 247
           GHFD EID+  L+     K++ IK
Sbjct: 349 GHFDNEIDMLGLETYPGVKRITIK 372



 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 47/70 (67%), Positives = 54/70 (77%), Gaps = 2/70 (2%)
 Frame = +1

Query: 286 IIVLAAGRLVNLGCATGHSSFVMSNSFTNQVLAQIELWTK--ADTYPIGVHTLPKKLDEE 459
           IIVLA GRL+NLGCATGH SFVMS SFTNQV+AQ+ELW +  +  Y   V+ LPK LDE+
Sbjct: 387 IIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNEKASGKYEKKVYVLPKHLDEK 446

Query: 460 VAALHLDHLG 489
           VA LHL  LG
Sbjct: 447 VALLHLGKLG 456



 Score = 36.3 bits (80), Expect = 0.021
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 468 LAFGSPWCKTDEVKPKQAKYIGVSREGPYKPDHYRY 575
           L  G    +  ++   Q+ Y+ +  EGPYKP HYRY
Sbjct: 450 LHLGKLGARLTKLSKDQSDYVSIPIEGPYKPPHYRY 485


>At3g23810.1 68416.m02993 adenosylhomocysteinase, putative /
           S-adenosyl-L-homocysteine hydrolase, putative /
           AdoHcyase, putative strong similarity to
           SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1)
           (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
           {Nicotiana sylvestris}; contains Pfam profile PF00670:
           S-adenosyl-L-homocysteine hydrolase, NAD binding domain
          Length = 485

 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 49/84 (58%), Positives = 60/84 (71%), Gaps = 2/84 (2%)
 Frame = +2

Query: 2   IVTEIDPINALQAAMEGFQVTTMEEAAEVGQIFVTTTGNIDIICKEHLLRMKDDAIVCNI 181
           IVTEIDPI ALQA MEG QV T+E+      IF TTTGN DII  +H+ +MK++AIVCNI
Sbjct: 289 IVTEIDPICALQALMEGLQVLTLEDVVSEADIFCTTTGNKDIIMVDHMRKMKNNAIVCNI 348

Query: 182 GHFDCEIDVAWLDN--NAKKVNIK 247
           GHFD EID+  L+     K++ IK
Sbjct: 349 GHFDNEIDMLGLETYPGVKRITIK 372



 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 51/81 (62%), Positives = 60/81 (74%), Gaps = 3/81 (3%)
 Frame = +1

Query: 256 DRYELENGNH-IIVLAAGRLVNLGCATGHSSFVMSNSFTNQVLAQIELWTKADT--YPIG 426
           DR+   + N  IIVLA GRL+NLGCATGH SFVMS SFTNQV+AQ+ELW +  +  Y   
Sbjct: 376 DRWVFPDTNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNEKSSGKYEKK 435

Query: 427 VHTLPKKLDEEVAALHLDHLG 489
           V+ LPK LDE+VAALHL  LG
Sbjct: 436 VYVLPKHLDEKVAALHLGKLG 456



 Score = 35.5 bits (78), Expect = 0.037
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 462 SCLAFGSPWCKTDEVKPKQAKYIGVSREGPYKPDHYRY 575
           + L  G    +  ++   Q+ Y+ +  EGPYKP HYRY
Sbjct: 448 AALHLGKLGARLTKLTKDQSDYVSIPVEGPYKPVHYRY 485


>At2g27230.1 68415.m03272 transcription factor-related contains weak
           similarity to anthocyanin 1 (GI:10998404) [Petunia x
           hybrida]; identical to cDNA bHLH transcription factor
           (bHLH delta gene) gi:32563001
          Length = 650

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 280 NHIIVLAAGRLVNLGCATGHSSFVMSNSFTNQV 378
           N+ I+L    LV     TGH  ++++NSF   V
Sbjct: 75  NNRIILVGEGLVGRAAFTGHHQWILANSFNRDV 107


>At5g49890.1 68418.m06178 chloride channel protein (CLC-c) identical
           to gi:1742956
          Length = 779

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 8/45 (17%)
 Frame = +3

Query: 459 SSCLAFGSPW---CKTDEVKPKQAKYIGVSREGPYK-----PDHY 569
           SSC AFG PW   C    +  ++ K   V R   YK     P+HY
Sbjct: 390 SSCCAFGLPWLSQCTPCPIGIEEGKCPSVGRSSIYKSFQCPPNHY 434


>At1g15740.1 68414.m01888 leucine-rich repeat family protein
          Length = 585

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 187 VTNVAHNCIV-LHSKKMFFAYNVNISRRGDKDLTHFSGFLHSSHLK 53
           + N+ ++C+V L       + N++  R GD+ L H SG L    L+
Sbjct: 343 MNNITNSCLVHLKGLTKLESLNLDSCRIGDEGLVHLSGMLELKSLE 388


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,777,221
Number of Sequences: 28952
Number of extensions: 317960
Number of successful extensions: 629
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)