Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30128
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    27   4.0  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    27   4.0  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    25   9.4  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    25   9.4  

>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = -1

Query: 353 YRGFITSVILFSDIFNYCFRVHFTNSRIAIRQEMMMGSKDRISSLLEDVELAKSSDLFLI 174
           Y+G I  + +     NY  R  F N      QE     K+ +++LL +  +A++    L+
Sbjct: 499 YKGIILMLNVLDSCTNYVGRYTFLNELFEYLQEKTTYYKNNLTTLLNNDYIAQAGLSDLL 558

Query: 173 RSMA 162
           + +A
Sbjct: 559 QKIA 562


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 687 KKSQRKSKFRYPSRKVIYP*TSMGLFTIKQLL 782
           K+  +KSK + P RK+ +P   +G F+  +L+
Sbjct: 385 KEQHKKSKNKDPFRKITHPSLHLGKFSTPKLI 416


>SPCC550.03c |||RNA helicase involved in mRNA
            catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +1

Query: 313  MSLKRITEVMKPRYFHLLSVRMRIPSSCASCRSATTVLRDTSTRPQTRRCSCANFYRQ 486
            MS  RIT++       ++   +R+      CR A  V+ D+S    T+   C N  R+
Sbjct: 1148 MSFNRITDLTDVLEGSIVRTIIRLDEVLRECRGAARVVGDSSM--YTKMEECQNLIRR 1203


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 197 KSSDLFLIRSMAVPSAASMLVPPFASSLS 111
           K   L +  S + P+ AS+L PP ++SLS
Sbjct: 610 KDRSLNVTPSSSTPTPASVLAPPSSASLS 638


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,806,215
Number of Sequences: 5004
Number of extensions: 52019
Number of successful extensions: 149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)