Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30128
         (788 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0304 - 16640937-16642877                                         33   0.34 
12_02_0879 + 23960084-23961551,23961796-23962184                       31   1.4  
03_06_0353 - 33317015-33318235,33318567-33318824,33319587-333199...    29   4.2  
10_08_0302 - 16626622-16626624,16626809-16628761,16631452-16631655     29   5.6  
09_04_0625 - 19044775-19045078,19045178-19045382,19045534-190461...    28   7.4  
06_03_0772 + 24483314-24486781,24487148-24487240,24488366-24488458     28   7.4  
04_04_0463 - 25397837-25399693,25402136-25402405                       28   7.4  

>10_08_0304 - 16640937-16642877
          Length = 646

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 20/50 (40%), Positives = 27/50 (54%)
 Frame = +1

Query: 67  SKATPENIARAKIIIDRLEANGGTNIDAALGTAIDLIRNRSELFANSTSS 216
           S+ T    A AK  +  L A GGTNI AAL  A  ++ +R  L+ N+  S
Sbjct: 227 SRMTDAGKAHAKRAVGSLSARGGTNIGAALRKAAKVLDDR--LYRNAVES 274


>12_02_0879 + 23960084-23961551,23961796-23962184
          Length = 618

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +1

Query: 43  VKPTLKPASKATPENIARAKIIIDRLEANGGTNIDAALGTAIDLIR--NRSELFANSTSS 216
           VKP +K  S AT  N +  KI+        GT I+++ G+ +      NR + F ++ +S
Sbjct: 283 VKPKVKETSTATRSNASSQKIVRTLDRKASGTTIESSNGSKVVRATKFNRDKKFRSTVAS 342

Query: 217 N 219
           N
Sbjct: 343 N 343


>03_06_0353 - 33317015-33318235,33318567-33318824,33319587-33319904,
            33319949-33320011,33320103-33320496,33320684-33320796,
            33320932-33321639,33321667-33323199,33323395-33323607,
            33323718-33324700,33324890-33325423,33325694-33325820,
            33326083-33326162,33327347-33327377,33327949-33328053,
            33328119-33328124,33328349-33328985,33329144-33329478,
            33330394-33331113
          Length = 2792

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/34 (32%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
 Frame = +3

Query: 255  FLTDGDPTVGEMNPK---TIIKNVAEKNYGSDEA 347
            F+T+  PT+GE+NP+    +I+ +  + +G D++
Sbjct: 1115 FITNKSPTLGEVNPEEATLVIETIRREEFGLDQS 1148


>10_08_0302 - 16626622-16626624,16626809-16628761,16631452-16631655
          Length = 719

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = +1

Query: 55  LKPASKATPENIARAKIIIDRLEANGGTNIDAALGTAIDLIRNRSE 192
           L P  K T     RA   +  L A+GGTNI  AL  A  ++ +R E
Sbjct: 309 LFPLRKMTESGRQRALQRVSSLVADGGTNIADALRKAARVMEDRRE 354


>09_04_0625 -
           19044775-19045078,19045178-19045382,19045534-19046168,
           19046334-19047391
          Length = 733

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -3

Query: 420 RCCGATTCAGAWDPHPHRKQVKISWLHHFRNS 325
           +CC AT C   WD   H    KIS L   R S
Sbjct: 588 QCCSATGCERNWDIFHHIHSRKISRLERSRLS 619


>06_03_0772 + 24483314-24486781,24487148-24487240,24488366-24488458
          Length = 1217

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 197 LPIQHLPTKMKSCLWSPSSFPDGWRSD 277
           L  QHLP  ++ C    S FP  WR D
Sbjct: 427 LSYQHLPIHLQLCFSFCSLFPKNWRFD 453


>04_04_0463 - 25397837-25399693,25402136-25402405
          Length = 708

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = +1

Query: 109 IDRLEANGGTNIDAALGTAIDLIRNRSELFANSTSS 216
           I+ L A+GGTNI  AL  A+ +I +RS  + NS  S
Sbjct: 341 INSLGASGGTNIADALKKAMKVIEDRS--YKNSVCS 374


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,562,380
Number of Sequences: 37544
Number of extensions: 355407
Number of successful extensions: 1144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)