Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30128
(788 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8914| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.15
SB_53705| Best HMM Match : Cornifin (HMM E-Value=1.3) 31 1.1
SB_37528| Best HMM Match : Cornifin (HMM E-Value=0.97) 31 1.1
SB_71| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_24547| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-18) 30 2.5
SB_58083| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_12202| Best HMM Match : SRCR (HMM E-Value=4.8e-34) 29 4.3
SB_21237| Best HMM Match : HATPase_c (HMM E-Value=1.9e-12) 29 5.7
>SB_8914| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1142
Score = 33.9 bits (74), Expect = 0.15
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -3
Query: 378 HPHRKQVKISWLHHFRNSFQRHF*LLFSGSFHQQSDRHPSGNDDGLQRQDFI-FVGRC 208
H R+ +K +W + + +H + HQQ+ + S NDD +R++ + V RC
Sbjct: 291 HERREDIKRTWWNRLQEEAFQHLHFFVHTTLHQQALQSLSPNDDDNKREELLKLVARC 348
>SB_53705| Best HMM Match : Cornifin (HMM E-Value=1.3)
Length = 308
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = -1
Query: 170 SMAVPSAASMLVPPFASSL 114
SM VP+ ASMLVPP+AS L
Sbjct: 153 SMLVPTYASMLVPPYASML 171
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = -1
Query: 179 LIRSMAVPSAASMLVPPFASSL 114
L SM VP ASMLVPP+AS L
Sbjct: 46 LYASMLVPLYASMLVPPYASML 67
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = -1
Query: 170 SMAVPSAASMLVPPFASSL 114
S+ VP ASMLVPP+ASSL
Sbjct: 201 SILVPPYASMLVPPYASSL 219
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = -1
Query: 170 SMAVPSAASMLVPPFASSL 114
SM VP AS+LVPP+ASSL
Sbjct: 281 SMLVPPYASILVPPYASSL 299
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = -1
Query: 179 LIRSMAVPSAASMLVPPFASSL 114
L S+ VP AS+LVPP+ASSL
Sbjct: 70 LYASILVPPYASILVPPYASSL 91
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = -1
Query: 209 VELAKSSDLFLIRSMAVPSAASMLVPPFASSL 114
V L S + L S+ VP ASMLVPP+AS L
Sbjct: 260 VPLYASMLVRLYASILVPPYASMLVPPYASIL 291
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -1
Query: 170 SMAVPSAASMLVPPFASSL 114
SM VP AS+LVPP+AS+L
Sbjct: 129 SMLVPLYASILVPPYASTL 147
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -1
Query: 170 SMAVPSAASMLVPPFASSL 114
S+ VP AS LVPP+ASSL
Sbjct: 17 SILVPPYASTLVPPYASSL 35
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -1
Query: 170 SMAVPSAASMLVPPFASSL 114
SM VP AS+LVPP+AS L
Sbjct: 65 SMLVPLYASILVPPYASIL 83
>SB_37528| Best HMM Match : Cornifin (HMM E-Value=0.97)
Length = 443
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = -1
Query: 179 LIRSMAVPSAASMLVPPFASSL 114
L SM VP ASMLVPP+AS L
Sbjct: 118 LYASMLVPPYASMLVPPYASML 139
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = -1
Query: 179 LIRSMAVPSAASMLVPPFASSL 114
L SM VP ASMLVPP+AS L
Sbjct: 150 LYASMLVPPYASMLVPPYASML 171
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = -1
Query: 179 LIRSMAVPSAASMLVPPFASSL 114
L SM VP ASMLVPP+AS L
Sbjct: 110 LYASMLVPLYASMLVPPYASML 131
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = -1
Query: 179 LIRSMAVPSAASMLVPPFASSL 114
L SM VP ASMLVPP+AS L
Sbjct: 62 LYASMLVPLYASMLVPPYASIL 83
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -1
Query: 170 SMAVPSAASMLVPPFASSL 114
SM VP ASMLVPP+AS L
Sbjct: 89 SMLVPPYASMLVPPYASML 107
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -1
Query: 170 SMAVPSAASMLVPPFASSL 114
SM VP ASMLVPP+AS L
Sbjct: 129 SMLVPPYASMLVPPYASML 147
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -1
Query: 170 SMAVPSAASMLVPPFASSL 114
SM VP ASMLVPP+AS L
Sbjct: 161 SMLVPPYASMLVPPYASML 179
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -1
Query: 170 SMAVPSAASMLVPPFASSL 114
SM VP ASMLVPP+AS L
Sbjct: 169 SMLVPPYASMLVPPYASML 187
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -1
Query: 170 SMAVPSAASMLVPPFASSL 114
SM VP ASMLVPP+AS L
Sbjct: 177 SMLVPPYASMLVPPYASML 195
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -1
Query: 170 SMAVPSAASMLVPPFASSL 114
SM VP ASMLVPP+AS L
Sbjct: 145 SMLVPLYASMLVPPYASML 163
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -1
Query: 170 SMAVPSAASMLVPPFASSL 114
SM VP ASMLVPP+AS L
Sbjct: 25 SMLVPVYASMLVPPYASIL 43
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -1
Query: 179 LIRSMAVPSAASMLVPPFASSL 114
L SM VP AS+LVPP+AS L
Sbjct: 70 LYASMLVPPYASILVPPYASML 91
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -1
Query: 179 LIRSMAVPSAASMLVPPFASSL 114
L S+ VP ASMLVPP+AS L
Sbjct: 214 LYASILVPPYASMLVPPYASML 235
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -1
Query: 179 LIRSMAVPSAASMLVPPFASSL 114
L SM VP AS+LVPP+AS L
Sbjct: 206 LYASMLVPLYASILVPPYASML 227
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -1
Query: 179 LIRSMAVPSAASMLVPPFASSL 114
L S+ VP ASMLVPP+AS L
Sbjct: 374 LYASILVPLYASMLVPPYASML 395
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -1
Query: 170 SMAVPSAASMLVPPFASSL 114
SM VP AS+LVPP+AS+L
Sbjct: 417 SMLVPLYASILVPPYASTL 435
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -1
Query: 170 SMAVPSAASMLVPPFASSL 114
S+ VP ASMLVPP+AS L
Sbjct: 81 SILVPPYASMLVPPYASML 99
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -1
Query: 179 LIRSMAVPSAASMLVPPFASSL 114
L SM VP AS+LVPP+AS L
Sbjct: 254 LYASMLVPLYASILVPPYASIL 275
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -1
Query: 170 SMAVPSAASMLVPPFASSL 114
SM VP AS+LVPP+AS L
Sbjct: 33 SMLVPPYASILVPPYASIL 51
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -1
Query: 179 LIRSMAVPSAASMLVPPFASSL 114
L S+ VP AS+LVPP+AS L
Sbjct: 262 LYASILVPPYASILVPPYASML 283
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -1
Query: 179 LIRSMAVPSAASMLVPPFASSL 114
L SM VP AS LVPP+AS L
Sbjct: 334 LYASMLVPLYASTLVPPYASIL 355
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -1
Query: 170 SMAVPSAASMLVPPFASSL 114
SM VP AS+LVPP+AS L
Sbjct: 393 SMLVPLYASILVPPYASIL 411
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -1
Query: 179 LIRSMAVPSAASMLVPPFASSL 114
L S+ VP AS+LVPP+AS L
Sbjct: 398 LYASILVPPYASILVPPYASML 419
>SB_71| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -1
Query: 170 SMAVPSAASMLVPPFASSL 114
SM VP ASMLVPP+AS L
Sbjct: 57 SMLVPPYASMLVPPYASML 75
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = -1
Query: 179 LIRSMAVPSAASMLVPPFASSL 114
L SM VP AS+LVPP+AS+L
Sbjct: 238 LYASMLVPLYASILVPPYASTL 259
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -1
Query: 179 LIRSMAVPSAASMLVPPFASSL 114
L S+ VP ASMLVPP+AS L
Sbjct: 118 LYASILVPLYASMLVPPYASML 139
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -1
Query: 179 LIRSMAVPSAASMLVPPFASSL 114
L SM VP AS+LVPP+AS L
Sbjct: 262 LYASMLVPPYASILVPPYASIL 283
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -1
Query: 179 LIRSMAVPSAASMLVPPFASSL 114
L SM VP AS+LVPP+AS L
Sbjct: 94 LYASMLVPLYASILVPPYASIL 115
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -1
Query: 179 LIRSMAVPSAASMLVPPFASSL 114
L S+ VP ASMLVPP+AS L
Sbjct: 174 LYASILVPLYASMLVPPYASIL 195
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -1
Query: 170 SMAVPSAASMLVPPFASSL 114
S+ VP ASMLVPP+AS L
Sbjct: 193 SILVPLYASMLVPPYASML 211
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = -1
Query: 170 SMAVPSAASMLVPPFASSL 114
S+ VP AS+LVPP+AS+L
Sbjct: 273 SILVPPYASILVPPYASTL 291
>SB_24547| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-18)
Length = 195
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Frame = +1
Query: 385 PSSCASC----RSATTVLRDTSTRPQTRRCSCAN 474
P CA C R A+T++R T + R CSC N
Sbjct: 114 PFKCAHCERLFRQASTLVRHVRTHTRLRPCSCTN 147
>SB_58083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 727
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 188 QSFL-PIQHLPTKMKSCLWSPSSFPDGWRSD 277
QSFL P+QH PT S W+ S DGW ++
Sbjct: 20 QSFLRPVQHSPTSGWSNCWTASR--DGWEAE 48
>SB_12202| Best HMM Match : SRCR (HMM E-Value=4.8e-34)
Length = 560
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 188 QSFL-PIQHLPTKMKSCLWSPSSFPDGWRSD 277
QSFL P+QH PT S W+ S DGW ++
Sbjct: 293 QSFLRPVQHSPTSGWSNCWTASR--DGWEAE 321
>SB_21237| Best HMM Match : HATPase_c (HMM E-Value=1.9e-12)
Length = 328
Score = 28.7 bits (61), Expect = 5.7
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 10/92 (10%)
Frame = -1
Query: 461 QRRV*GLVDVSRKTVVAERQLAQELGIRILTESK*KY---RGFITSVILFSDIFNYCFRV 291
Q ++ + ++ +K V ++Q +L + +E+K K GFI S ILF +F F
Sbjct: 31 QNKIWAVAEIEKKYAVNQKQKEIQL---LASENKIKIFQRNGFIASSILFLLLFGTAFYF 87
Query: 290 HF----TNSRIAIRQE---MMMGSKDRISSLL 216
++ TN I +++E + +KD++ S++
Sbjct: 88 YYQKKRTNKIIEVQKENLDALNATKDKLFSII 119
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,360,620
Number of Sequences: 59808
Number of extensions: 395230
Number of successful extensions: 1185
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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