Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30128
         (788 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribo...    30   2.2  
AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribo...    30   2.2  
AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribo...    30   2.2  
AF000261-11|AAB52931.1|  268|Caenorhabditis elegans Hypothetical...    29   3.8  
Z81063-6|CAB02957.2|  296|Caenorhabditis elegans Hypothetical pr...    29   5.0  

>AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribose
            metabolism enzyme-5 protein.
          Length = 2238

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 58   KPASKATPENIARAKIIIDRLEAN 129
            +P  + T ENI +AK+++D+LE N
Sbjct: 1907 QPFGRFTKENIEKAKLVLDKLEKN 1930


>AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribose)
            metabolism enzymeprotein 5, isoform a protein.
          Length = 2276

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 58   KPASKATPENIARAKIIIDRLEAN 129
            +P  + T ENI +AK+++D+LE N
Sbjct: 1945 QPFGRFTKENIEKAKLVLDKLEKN 1968


>AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribose)
            metabolism enzymeprotein 5, isoform b protein.
          Length = 2238

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 58   KPASKATPENIARAKIIIDRLEAN 129
            +P  + T ENI +AK+++D+LE N
Sbjct: 1907 QPFGRFTKENIEKAKLVLDKLEKN 1930


>AF000261-11|AAB52931.1|  268|Caenorhabditis elegans Hypothetical
           protein F19B10.1 protein.
          Length = 268

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +1

Query: 46  KPTLKPASKATPENIARAKIIIDRLEANGGT 138
           KP ++P+   +PE +A  K + + ++A GG+
Sbjct: 72  KPAVEPSPSCSPETVAVQKFVTEFMQAAGGS 102


>Z81063-6|CAB02957.2|  296|Caenorhabditis elegans Hypothetical
           protein F15D3.8 protein.
          Length = 296

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = -1

Query: 542 DHLIRCVDKFDSDSRGEETCL*KFAQLQRRV*GLVDVSRKTVVAERQLAQELGI 381
           D  +RC+   D+D+   E  +    QL+R V   +D  R+ +  E+ +++E+GI
Sbjct: 159 DIKLRCITDGDADNGYIEYEVDYVGQLRRSVYTEIDEFREYIADEKNISKEIGI 212


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,772,523
Number of Sequences: 27780
Number of extensions: 301870
Number of successful extensions: 884
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)