Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30128
         (788 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35940.2 68415.m04412 homeodomain-containing protein contains...    29   3.5  
At2g35940.1 68415.m04411 homeodomain-containing protein contains...    29   3.5  
At2g38160.1 68415.m04684 expressed protein                             29   4.6  
At5g16180.1 68418.m01891 hypothetical protein contains Pfam doma...    28   8.1  

>At2g35940.2 68415.m04412 homeodomain-containing protein contains
           'Homeobox' domain signature, Prosite:PS00027
          Length = 680

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 4   PPKRKYSYYDRHDVKPTLKPASKATP 81
           PP+ +YS Y  H V PT + A+  TP
Sbjct: 108 PPRVQYSLYGSHQVDPTHQQAACETP 133


>At2g35940.1 68415.m04411 homeodomain-containing protein contains
           'Homeobox' domain signature, Prosite:PS00027
          Length = 680

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 4   PPKRKYSYYDRHDVKPTLKPASKATP 81
           PP+ +YS Y  H V PT + A+  TP
Sbjct: 108 PPRVQYSLYGSHQVDPTHQQAACETP 133


>At2g38160.1 68415.m04684 expressed protein
          Length = 299

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 19/61 (31%), Positives = 33/61 (54%)
 Frame = +1

Query: 40  DVKPTLKPASKATPENIARAKIIIDRLEANGGTNIDAALGTAIDLIRNRSELFANSTSSN 219
           +VKP++KP+ +ATP   +RA +   RL  +   +   ++ T+I     R+  F  S+S  
Sbjct: 138 EVKPSIKPSRQATP--TSRATLPSTRLTNSAQKSNSESITTSIK-SNTRASAFPRSSSVG 194

Query: 220 K 222
           K
Sbjct: 195 K 195


>At5g16180.1 68418.m01891 hypothetical protein contains Pfam domain,
           PF04581: Protein of unknown function (DUF578)
          Length = 718

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 575 RTELGL-GNTALDHLIRCVDKFDSDSRGEET 486
           R E G+ G  A+  ++R V+K D DS  EET
Sbjct: 122 RRESGVRGKKAMKKIVRNVEKLDEDSDSEET 152


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,905,845
Number of Sequences: 28952
Number of extensions: 282529
Number of successful extensions: 897
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)