Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30123
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   2.9  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   3.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   3.8  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   3.8  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   5.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   6.7  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   8.8  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   8.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.8  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 389 PNWHRDLVRVCEGIPIVLCGNKVDIKDRKVKAKTIVFHRKRIC 517
           PNW  + V+ C+G+  V    +VD   R     T +   K+IC
Sbjct: 107 PNWSYNDVKYCDGLTSVY-RMQVDKCGRLWILDTGILGEKQIC 148


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 276 HTLKRIGRGSYGIL 235
           H  + IGRG YGI+
Sbjct: 595 HCAEEIGRGQYGIV 608


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 276 HTLKRIGRGSYGIL 235
           H  + IGRG YGI+
Sbjct: 633 HCAEEIGRGQYGIV 646


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 209 DSGCRSTSSSIPYEPRPIRFNVWD 280
           DS  R TSS+  Y+PR  ++ + D
Sbjct: 218 DSFQRLTSSTFVYDPRYTKYTIND 241


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 20/74 (27%), Positives = 35/74 (47%)
 Frame = -2

Query: 499 ENNSFRLNFSVFNIHFVSAQDNRDTFTYTDQISMPVRYIFVRNSRGYVEHDDSTLSLNIV 320
           E N +  N  + N+ F   Q      T T Q +M +  +   +S+  V  DD+     ++
Sbjct: 362 EMNKWWWNMKISNLSF-DKQSLLKENTVTCQEAMHM--LKNADSQLLVISDDNIHIKGVI 418

Query: 319 SVSKTTKLLLSGCV 278
           S++K T  ++SG V
Sbjct: 419 SLNKLTSYVISGIV 432


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 6/29 (20%), Positives = 18/29 (62%)
 Frame = +2

Query: 380 KNVPNWHRDLVRVCEGIPIVLCGNKVDIK 466
           K++ +W  ++  + +G P++   N +D++
Sbjct: 379 KSLEDWENEMNIITKGKPLIRVENIIDLE 407


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 661 WQNQIEKDLQDA 696
           W+N+ E D QDA
Sbjct: 346 WENENESDYQDA 357


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 660 WRIHCNFWWQKGRHGN 613
           WRI  NF++   R+GN
Sbjct: 210 WRITHNFFYFDPRYGN 225


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +2

Query: 215 GCRSTSSSIPYEPRPIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 346
           G   T  ++P    PIR  + D +     GGL D   ++ + A+
Sbjct: 437 GSMPTMPTMPSMAGPIRRRISDKSALSLAGGLYDEGTVRRRVAV 480


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,918
Number of Sequences: 438
Number of extensions: 5058
Number of successful extensions: 21
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)