Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30122X
         (529 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4639| Best HMM Match : Saccharop_dh (HMM E-Value=3e-06)             28   4.1  
SB_58047| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_15644| Best HMM Match : Vicilin_N (HMM E-Value=4.9)                 27   9.6  
SB_9803| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.6  

>SB_4639| Best HMM Match : Saccharop_dh (HMM E-Value=3e-06)
          Length = 268

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -3

Query: 473 LGFVGPQGGYHSIVY 429
           LGFVG  G YHSI+Y
Sbjct: 160 LGFVGHYGTYHSIIY 174


>SB_58047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 171 NYTLQPMDKENYDVRFIRLCA 109
           N TL+  D ENY +R  RLCA
Sbjct: 110 NNTLRMRDNENYTLRMKRLCA 130


>SB_15644| Best HMM Match : Vicilin_N (HMM E-Value=4.9)
          Length = 212

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 200 KSQKDYMKINYWYFFFFA*RVKATSSLPYWCKMIAEVNRHHYMN 331
           K ++ Y+ IN W  +    R+++  S  YW K++ E+N  +  N
Sbjct: 40  KEEETYL-INLWVSYHE--RLESKDSRKYWAKLVDELNNKYNNN 80


>SB_9803| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 200 KSQKDYMKINYWYFFFFA*RVKATSSLPYWCKMIAEVNRHHYMN 331
           K ++ Y+ IN W  +    R+++  S  YW K++ E+N  +  N
Sbjct: 84  KEEETYL-INLWVSYHE--RLESKDSRKYWAKLVDELNNKYNNN 124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,396,381
Number of Sequences: 59808
Number of extensions: 324155
Number of successful extensions: 588
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)