Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30122X
         (529 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11800.1 68417.m01879 calcineurin-like phosphoesterase family...    28   3.4  
At3g59850.1 68416.m06679 polygalacturonase, putative / pectinase...    27   7.8  

>At4g11800.1 68417.m01879 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 1012

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 278 LPYWCKMIAEVNRHHYMNATCHETSG 355
           L Y CK+    + HHYM  +C+++ G
Sbjct: 598 LKYRCKLRMAGDLHHYMRHSCNQSDG 623


>At3g59850.1 68416.m06679 polygalacturonase, putative / pectinase,
           putative similar to SP|P48979 Polygalacturonase
           precursor (EC 3.2.1.15) (PG) (Pectinase) {Prunus
           persica}; contains PF00295: Glycosyl hydrolases family
           28 (polygalacturonases)
          Length = 388

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 355 SKSQFYSITAAQVFKPESLTTSRHK*TILWYPPCGPTKP 471
           S +Q Y+I +    KP+  T S    T+LW   C   KP
Sbjct: 18  SSAQTYNILSYGA-KPDGKTDSTKAFTVLWAKACASVKP 55


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,415,919
Number of Sequences: 28952
Number of extensions: 223647
Number of successful extensions: 503
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)