Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30121
(767 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.11c |sdc1||Dpy-30 domain protein|Schizosaccharomyces pomb... 35 0.011
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch... 29 0.55
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos... 28 1.3
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo... 28 1.3
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 27 2.2
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 26 5.2
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 26 5.2
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 26 5.2
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa... 26 6.8
SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch... 25 9.0
>SPCC18.11c |sdc1||Dpy-30 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 109
Score = 35.1 bits (77), Expect = 0.011
Identities = 12/27 (44%), Positives = 21/27 (77%)
Frame = +3
Query: 258 PILLQGLSALAKERPPDPINYLAAYLL 338
P+LL+G+ LA++RP +P+ +L +LL
Sbjct: 17 PVLLEGMKILARDRPENPLQFLGQFLL 43
>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 185
Score = 29.5 bits (63), Expect = 0.55
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2
Query: 637 SIDYIFPFCQL*CTYAYYKANWYIFSSLLNNRTI 536
+ID F C CT Y+ N Y+ +LN R +
Sbjct: 80 TIDAFFSMCLRSCTIIYFSMNPYMLCEILNARNV 113
>SPBC1348.07 |||S. pombe specific DUF999 protein family
6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Frame = -1
Query: 476 KMFPVIALRLATFIVCIIIK----LYLCLWVCWLIIVIA 372
K P+I++ +A +V I + LY+C W+ + I+++A
Sbjct: 147 KAIPLISIVIAAVVVIIAVAMVKILYICHWLIYKILILA 185
>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Frame = -1
Query: 476 KMFPVIALRLATFIVCIIIK----LYLCLWVCWLIIVIA 372
K P+I++ +A +V I + LY+C W+ + I+++A
Sbjct: 147 KAIPLISIVIAAVVVIIAVAMVKILYICHWLIYKILILA 185
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +1
Query: 103 NHNKEEQSTTKIPDSVKKIILMEKDNEANANRKSRI 210
+ N+ ++ TTK +S+KKI L E + + A ++S +
Sbjct: 88 SENELDEETTKNANSIKKISLEEVEKQRKAIKRSGV 123
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/63 (23%), Positives = 26/63 (41%)
Frame = +1
Query: 85 ESSTQINHNKEEQSTTKIPDSVKKIILMEKDNEANANRKSRIDLNALPTRQYLDQTVYPY 264
ES++ + + E + D + + K + A + AL R+Y Q +Y
Sbjct: 397 ESNSDLTPSSTEDEEDVVSDQLAILYDKVKTSGAELPSAPKPSTFALDLREYQKQALYWM 456
Query: 265 CCK 273
CCK
Sbjct: 457 CCK 459
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 127 TTKIPDSVKKIILMEKDNEANANRK 201
T KI + VK I+++++DN NRK
Sbjct: 1165 TDKIMEVVKAILIVQRDNGDRENRK 1189
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -3
Query: 486 SVQQNVSSHCFEISYFHCLHYNKAILMFVGLLVDYCYCL 370
SV ++ S +EI+ HC H+++ +L + L Y + L
Sbjct: 409 SVIADIESGEYEIAIEHCFHFSQTVLSGLRYLQRYDWLL 447
>SPAC977.06 |||S. pombe specific DUF999 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 189
Score = 25.8 bits (54), Expect = 6.8
Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -1
Query: 476 KMFPVIALRLATFIVCIIIKLYLCLWVC-WLI 384
K P+I++ +A +V I + + L++C WL+
Sbjct: 147 KAIPLISIVIAAVVVIIAVAMVKILYICHWLL 178
>SPBC577.05c |rec27|mug41|meiotic recombination protein
Rec27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 25.4 bits (53), Expect = 9.0
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +1
Query: 46 FFKVQLK*LQPMSESSTQINHNKEEQSTTKIPDSVKKIILMEKDNEANANRKSR 207
F V LK Q SS I H EE + I VKK +E + + N + +
Sbjct: 9 FMNVNLKKKQLQITSSEIIEHVLEELNLKNIERRVKKYDQIESEYKTNIENEKK 62
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,091,693
Number of Sequences: 5004
Number of extensions: 62104
Number of successful extensions: 171
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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