Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30121
(767 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28681| Best HMM Match : Dpy-30 (HMM E-Value=2.2e-19) 60 2e-09
SB_13568| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_16677| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_52503| Best HMM Match : zf-CCHC (HMM E-Value=2.6) 29 3.1
SB_58880| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_8559| Best HMM Match : Dpy-30 (HMM E-Value=3.7e-11) 29 5.5
SB_40639| Best HMM Match : CAP_GLY (HMM E-Value=0) 28 7.2
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 28 9.5
>SB_28681| Best HMM Match : Dpy-30 (HMM E-Value=2.2e-19)
Length = 371
Score = 60.1 bits (139), Expect = 2e-09
Identities = 27/35 (77%), Positives = 32/35 (91%)
Frame = +3
Query: 255 VPILLQGLSALAKERPPDPINYLAAYLLKNKTTFE 359
VPILLQGL+ LAKERPP+ I+YLAAYLLKNK+ +E
Sbjct: 334 VPILLQGLATLAKERPPNAIDYLAAYLLKNKSQYE 368
Score = 45.6 bits (103), Expect = 4e-05
Identities = 22/47 (46%), Positives = 34/47 (72%)
Frame = +1
Query: 121 QSTTKIPDSVKKIILMEKDNEANANRKSRIDLNALPTRQYLDQTVYP 261
Q+ + ++++KII EK+ EA+ K+++DL +LPTR YLDQTV P
Sbjct: 290 QAEIGLTENLQKIIEKEKE-EADKPTKAKVDLQSLPTRAYLDQTVVP 335
>SB_13568| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 324
Score = 33.5 bits (73), Expect = 0.19
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Frame = +1
Query: 70 LQPMSESSTQI--NHNKEEQSTTKIPDSVKKIILMEKDNEANANRKSRIDLNALPTR 234
L+P+ E+ST +H +E+ +PDS +K L+E +NE+ ++ ++ D P++
Sbjct: 268 LEPVGEASTSRAGDHEMDEEEARCLPDSQRKTALVESENESWSDGGNKEDTPFDPSK 324
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/58 (24%), Positives = 32/58 (55%)
Frame = +1
Query: 88 SSTQINHNKEEQSTTKIPDSVKKIILMEKDNEANANRKSRIDLNALPTRQYLDQTVYP 261
+ST + + + +ST+ ++K + + +NE+ N K+ DL+++ +D + YP
Sbjct: 496 TSTSQHTHSDVRSTSVQEKTIKIKVTFDANNESEKNSKASEDLDSVLGNSAIDSSTYP 553
>SB_16677| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 30.3 bits (65), Expect = 1.8
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Frame = -3
Query: 633 SIIYFLFVNYSVHMHIIRQTGI----YFLVC*IIEL*NLSNLHHCH-RCLCHQMSVQQNV 469
SI FLF++ S H ++ I Y LV ++E+ N SNL +CH +CL + N
Sbjct: 11 SIFLFLFLSIS-HSELMYFNFIDIPAYALVGYVVEVFNTSNLVNCHMKCLDVSSCLSLNF 69
Query: 468 SSHCFEISYFHCLHYNKAILM 406
S F C N L+
Sbjct: 70 GRRSVNDSQFTCEVNNSTHLL 90
>SB_52503| Best HMM Match : zf-CCHC (HMM E-Value=2.6)
Length = 517
Score = 29.5 bits (63), Expect = 3.1
Identities = 23/66 (34%), Positives = 36/66 (54%)
Frame = +1
Query: 7 YESRIAPQ*NSIIFFKVQLK*LQPMSESSTQINHNKEEQSTTKIPDSVKKIILMEKDNEA 186
Y SR P +S+ F K + Q +S SST +N +K+E T DS + +L DN +
Sbjct: 358 YTSRW-PLYHSLHFLKDYINSKQSLSSSSTPLNTSKQELDCT--ADSDDQAVL-ASDNVS 413
Query: 187 NANRKS 204
N +++S
Sbjct: 414 NVSQES 419
>SB_58880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1098
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 136 IPDSVKKIILMEKDNEANANRKSRIDLNALPTRQYLDQTV--YPYCCK 273
I S +K+ +EK+ E NA ++++N +YL P+CCK
Sbjct: 735 IQKSEEKVASLEKEVEENACYLKKLEVNFTTLYRYLSPAYKETPFCCK 782
>SB_8559| Best HMM Match : Dpy-30 (HMM E-Value=3.7e-11)
Length = 806
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 255 VPILLQGLSALAKERPPDPINYLAAYL 335
+P L QGL K RP DPI+++ + L
Sbjct: 663 MPTLTQGLIEACKVRPDDPIDFVVSML 689
>SB_40639| Best HMM Match : CAP_GLY (HMM E-Value=0)
Length = 709
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = -3
Query: 510 HRCL--CHQMSVQQNVSSHCFEISYFHCLHYNKAILMF 403
HRC C+Q S QNV++ C E LH L F
Sbjct: 282 HRCSKQCYQWSYSQNVNTRCKEFEAGTALHIAATNLCF 319
>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 2735
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +1
Query: 85 ESSTQINHNKEEQSTTKIPDSVKKIILMEKDNEANANRKSRIDLNALPTRQYLDQTV 255
+ S +N N ++ T P++ K+N+ N+ R+ LN +PT Q L Q +
Sbjct: 1870 QHSVNVNINTAKKQTVATPET--------KNNDKNSKRQKISILNRIPTMQVLPQKI 1918
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,030,619
Number of Sequences: 59808
Number of extensions: 426087
Number of successful extensions: 1108
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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