Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30121
         (767 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78019-3|CAB01452.1|  123|Caenorhabditis elegans Hypothetical pr...    49   3e-06
U21302-1|AAA92286.1|  123|Caenorhabditis elegans dpy-30 protein.       49   3e-06
U58746-3|AAB00623.1|  188|Caenorhabditis elegans Hypothetical pr...    33   0.30 
Z34799-4|CAD44130.2|  691|Caenorhabditis elegans Hypothetical pr...    29   4.8  

>Z78019-3|CAB01452.1|  123|Caenorhabditis elegans Hypothetical
           protein ZK863.6 protein.
          Length = 123

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 22/38 (57%), Positives = 28/38 (73%)
 Frame = +3

Query: 255 VPILLQGLSALAKERPPDPINYLAAYLLKNKTTFELAN 368
           VPILLQGL ALAK+RP +PI +LA +LL+ K  +   N
Sbjct: 79  VPILLQGLGALAKDRPENPIEFLANFLLREKDRYNAEN 116



 Score = 31.5 bits (68), Expect = 0.68
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +1

Query: 115 EEQSTTKIPDSVKKIILMEKDNEANANRKSRIDLNALPTRQYLDQTVYP 261
           E    T +P +V    L     +   N+ +  + + +PTRQYLD TV P
Sbjct: 36  ESNENTTVPSNV----LSANGGQQTGNQSAPRNTSTVPTRQYLDSTVVP 80


>U21302-1|AAA92286.1|  123|Caenorhabditis elegans dpy-30 protein.
          Length = 123

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 22/38 (57%), Positives = 28/38 (73%)
 Frame = +3

Query: 255 VPILLQGLSALAKERPPDPINYLAAYLLKNKTTFELAN 368
           VPILLQGL ALAK+RP +PI +LA +LL+ K  +   N
Sbjct: 79  VPILLQGLGALAKDRPENPIEFLANFLLREKDRYNAEN 116



 Score = 31.5 bits (68), Expect = 0.68
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +1

Query: 115 EEQSTTKIPDSVKKIILMEKDNEANANRKSRIDLNALPTRQYLDQTVYP 261
           E    T +P +V    L     +   N+ +  + + +PTRQYLD TV P
Sbjct: 36  ESNENTTVPSNV----LSANGGQQTGNQSAPRNTSTVPTRQYLDSTVVP 80


>U58746-3|AAB00623.1|  188|Caenorhabditis elegans Hypothetical
           protein R05G6.5 protein.
          Length = 188

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +3

Query: 258 PILLQGLSALAKERPPDPINYLAAYL 335
           P L QGL+ +A ERP +PI +LA YL
Sbjct: 158 PKLSQGLARVAVERPDNPIKWLADYL 183


>Z34799-4|CAD44130.2|  691|Caenorhabditis elegans Hypothetical
           protein F34D10.7 protein.
          Length = 691

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 258 PILLQGLSALAKERPPDPINYLAAYLLK 341
           P+L + L+ +   RP DPI ++A +L K
Sbjct: 652 PVLTKALAEVLLRRPADPIGFIAEWLSK 679


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,835,573
Number of Sequences: 27780
Number of extensions: 339632
Number of successful extensions: 970
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)