Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30121
         (767 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28770.1 68416.m03591 expressed protein                             30   2.0  
At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family...    29   2.6  
At4g03300.1 68417.m00451 Ulp1 protease family protein contains P...    29   4.5  
At2g14770.2 68415.m01669 Ulp1 protease family protein similar to...    28   6.0  
At2g14770.1 68415.m01668 Ulp1 protease family protein similar to...    28   6.0  
At1g34740.1 68414.m04319 Ulp1 protease family protein contains P...    28   6.0  

>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 82   SESSTQINHNKEEQSTTKIPDSVKKIILMEKDNEANANRKSRID 213
            SES    N  K + +T    D  K  ILM+ D++A+++  S+ D
Sbjct: 1254 SESKEAENQQKSQATTQADSDESKNEILMQADSQADSHSDSQAD 1297



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 82   SESSTQINHNKEEQSTTKIPDSVKKIILMEKDNEANANRKSRID 213
            SES    N  K + +T    D  K  ILM+ D++A+++  S+ D
Sbjct: 1365 SESKEAENQQKSQATTQADSDESKNEILMQADSQADSHSDSQAD 1408



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 82   SESSTQINHNKEEQSTTKIPDSVKKIILMEKDNEANANRKSRID 213
            SES    N  K + +T    D  K  ILM+ D++A+ +  S+ D
Sbjct: 1476 SESKEAENQQKSQATTQGESDESKNEILMQADSQADTHANSQGD 1519


>At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family
            protein (ROS1) similar to DEMETER protein [Arabidopsis
            thaliana] GI:21743571; contains Pfam profile PF00730:
            HhH-GPD superfamily base excision DNA repair protein
          Length = 1393

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 198  KIQN*PQCSTDSTVFG-PDSVPILLQGLSALAKERPPDPINYLAAYLLKNKT 350
            K++N  Q  T+  V+  PD  P+L Q    L K  P DP +YL A     +T
Sbjct: 1192 KLKNISQLRTEHRVYELPDEHPLLAQ----LEKREPDDPCSYLLAIWTPGET 1239


>At4g03300.1 68417.m00451 Ulp1 protease family protein contains Pfam
            profile PF02902: Ulp1 protease family, C-terminal
            catalytic domain; similar to At3g24380, At5g36840,
            At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
            At2g05560, At4g08880, At1g34730, At1g27790 , At1g34740,
            At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
            At4g05280, At1g25886
          Length = 1285

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/53 (24%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
 Frame = +1

Query: 82   SESSTQINHNKEEQSTTKIPDSVKKIILMEKDNEANANRKSR-IDLNALPTRQ 237
            S+++  +   +E++++ K+P  VKK ++ E+D+    + K++ + +  +PT+Q
Sbjct: 950  SDNAAAVEAKEEKKASPKVPKKVKKQLIYEQDDAHPHDFKAKTVLVPDVPTQQ 1002


>At2g14770.2 68415.m01669 Ulp1 protease family protein similar to
           At3g24380, At5g36840, At5g35010, At3g42740, At4g05290,
           At2g14770, At3g43390, At2g05560, At4g08880, At1g34730,
           At1g27790, At1g34740, At1g27780, At5g36850, At3g42730,
           At1g52020, At3g24390,  At4g05280, At1g25886, At4g03300;
           contains Pfam profile PF02902: Ulp1 protease family,
           C-terminal catalytic domain
          Length = 1158

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/33 (30%), Positives = 23/33 (69%)
 Frame = +1

Query: 82  SESSTQINHNKEEQSTTKIPDSVKKIILMEKDN 180
           S+++  +   +E++S+ K+P  VKK ++ E+D+
Sbjct: 858 SDNAAAVEAEEEKKSSPKVPKKVKKQLVYEQDD 890


>At2g14770.1 68415.m01668 Ulp1 protease family protein similar to
           At3g24380, At5g36840, At5g35010, At3g42740, At4g05290,
           At2g14770, At3g43390, At2g05560, At4g08880, At1g34730,
           At1g27790, At1g34740, At1g27780, At5g36850, At3g42730,
           At1g52020, At3g24390,  At4g05280, At1g25886, At4g03300;
           contains Pfam profile PF02902: Ulp1 protease family,
           C-terminal catalytic domain
          Length = 1139

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/33 (30%), Positives = 23/33 (69%)
 Frame = +1

Query: 82  SESSTQINHNKEEQSTTKIPDSVKKIILMEKDN 180
           S+++  +   +E++S+ K+P  VKK ++ E+D+
Sbjct: 839 SDNAAAVEAEEEKKSSPKVPKKVKKQLVYEQDD 871


>At1g34740.1 68414.m04319 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At3g24380, At5g36840,
           At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At4g08880, At1g34730, At1g27790, At1g27780,
           At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
           At1g25886, At4g03300
          Length = 1383

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/33 (30%), Positives = 23/33 (69%)
 Frame = +1

Query: 82  SESSTQINHNKEEQSTTKIPDSVKKIILMEKDN 180
           S+++  +   +E++S+ K+P  VKK ++ E+D+
Sbjct: 810 SDNAAAVEAKEEKKSSPKVPKKVKKQLVYEQDD 842


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,415,170
Number of Sequences: 28952
Number of extensions: 294835
Number of successful extensions: 680
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)